Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31183 | Sorghum | nucleus, plastid | 97.26 | 96.98 |
| Zm00001d052138_P004 | Maize | nucleus | 95.09 | 96.06 |
| Os02t0771100-01 | Rice | nucleus | 89.47 | 90.51 |
| Zm00001d011892_P001 | Maize | cytosol | 15.87 | 88.0 |
| TraesCS6B01G356400.1 | Wheat | nucleus | 86.15 | 86.15 |
| TraesCS6D01G305800.1 | Wheat | nucleus | 86.72 | 85.98 |
| TraesCS6A01G326100.1 | Wheat | nucleus | 86.0 | 85.14 |
| VIT_10s0523g00030.t01 | Wine grape | nucleus | 68.54 | 78.9 |
| GSMUA_Achr3P20130_001 | Banana | nucleus | 76.19 | 78.11 |
| Bra021818.1-P | Field mustard | cytosol | 13.13 | 76.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 68.11 | 73.87 |
| CDY19171 | Canola | cytosol | 26.7 | 73.41 |
| Solyc12g005950.1.1 | Tomato | nucleus | 70.13 | 71.79 |
| KRH73341 | Soybean | nucleus | 68.54 | 71.0 |
| AT2G32950.1 | Thale cress | nucleus | 69.12 | 70.96 |
| KRH14801 | Soybean | nucleus | 68.98 | 70.81 |
| PGSC0003DMT400036075 | Potato | nucleus | 66.67 | 70.75 |
| CDY52540 | Canola | nucleus | 68.54 | 70.16 |
| CDY12145 | Canola | nucleus | 68.4 | 70.12 |
| Bra005541.1-P | Field mustard | nucleus | 67.53 | 69.96 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 67.97 | 69.67 |
| Solyc11g011980.1.1 | Tomato | nucleus | 66.96 | 69.05 |
| PGSC0003DMT400034706 | Potato | nucleus | 67.68 | 68.07 |
| CDX79494 | Canola | cytosol | 8.66 | 58.25 |
| Zm00001d016202_P001 | Maize | cytosol | 10.53 | 56.59 |
| Zm00001d043592_P004 | Maize | cytosol | 32.03 | 28.07 |
| Zm00001d011746_P002 | Maize | nucleus | 31.75 | 27.53 |
| Zm00001d014990_P001 | Maize | cytosol | 12.84 | 21.39 |
| Zm00001d039072_P005 | Maize | cytosol | 30.59 | 18.89 |
| Zm00001d009617_P017 | Maize | mitochondrion | 31.02 | 18.76 |
Protein Annotations
| MapMan:18.4.16 | MapMan:19.2.2.8.3.4.1 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.3.1 | Gene3D:3.30.40.10 | UniProt:A0A1D6HLL0 |
| ProteinID:AQK75277.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0016874 | InterPro:IPR001680 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | PFAM:PF13923 | ScanProsite:PS00518 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50089 |
| PFscan:PS50294 | PANTHER:PTHR44080 | PANTHER:PTHR44080:SF2 | SMART:SM00184 | SMART:SM00320 | SUPFAM:SSF50978 |
| SUPFAM:SSF57850 | UniParc:UPI0002209096 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d018207 | EnsemblPlants:Zm00001d018207_P001 | EnsemblPlants:Zm00001d018207_T001 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
Ubiquitin ligase protein COP1
Coordinates
chr5:-:216597825..216606598
Molecular Weight (calculated)
77291.6 Da
IEP (calculated)
7.106
GRAVY (calculated)
-0.405
Length
693 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSVAGAL VPSVPKPEPA PSGDTSAAAA ATTAALAMPE EAGMRAASAS PQGPAEEGEG PADRDLLCPI CMAVIKDAFL TACGHSFCYM CIVTHLSNKS
101: DCPCCGHYLT KAQLYPNFLL DKVLKKISAQ QIAKTASPID QFRCALQQGN EMGVKELDSL MTLIAEKKRQ MEQQESETNM QILLVFLHCL RKQKLEELNE
201: IQTDLQYIKE DISSVERHRA ELYRTKERYS MKLRMLLDEP TAQKMWPSPI DKASCRFLPN SRTPLSGSCP GTLQNKKLDL KAQVSHQGFQ RRDALTSSDP
301: PNSPIQSGNV IARKRRVQAQ FNELQEYYLQ RRRTGAQARR QEERDIVAMN REGYHAGLQD FQSVLTTFTR YSRLRVIAEL RHGDLFHSAN IVSSIEFDRD
401: DELFATAGVS KRIKVFEFST VVNEPSDVHC PVVEMATRSK LSCLSWNKYS KNIIASSDYE GIVTVWDVQT RQSVMEYEEH EKRAWSVDFS RTDSSMLVSG
501: SDDCKVKVWC TNQEASVINI DMKANICSVK YNPGSSFYVA VGSADHHIHY FDLRNPSSPV HIFGGHKKAV SYVKFLSNNE LASASTDSTL RLWDVKDNCP
601: VRTFRGHKNE KNFVGLSVNN EYIACGSETN EVFVYHKAIS KPAASHRFVS SDLDDADDDP GSYFISAVCW KSDSPTMLTA NSQGTIKVLV LAP
101: DCPCCGHYLT KAQLYPNFLL DKVLKKISAQ QIAKTASPID QFRCALQQGN EMGVKELDSL MTLIAEKKRQ MEQQESETNM QILLVFLHCL RKQKLEELNE
201: IQTDLQYIKE DISSVERHRA ELYRTKERYS MKLRMLLDEP TAQKMWPSPI DKASCRFLPN SRTPLSGSCP GTLQNKKLDL KAQVSHQGFQ RRDALTSSDP
301: PNSPIQSGNV IARKRRVQAQ FNELQEYYLQ RRRTGAQARR QEERDIVAMN REGYHAGLQD FQSVLTTFTR YSRLRVIAEL RHGDLFHSAN IVSSIEFDRD
401: DELFATAGVS KRIKVFEFST VVNEPSDVHC PVVEMATRSK LSCLSWNKYS KNIIASSDYE GIVTVWDVQT RQSVMEYEEH EKRAWSVDFS RTDSSMLVSG
501: SDDCKVKVWC TNQEASVINI DMKANICSVK YNPGSSFYVA VGSADHHIHY FDLRNPSSPV HIFGGHKKAV SYVKFLSNNE LASASTDSTL RLWDVKDNCP
601: VRTFRGHKNE KNFVGLSVNN EYIACGSETN EVFVYHKAIS KPAASHRFVS SDLDDADDDP GSYFISAVCW KSDSPTMLTA NSQGTIKVLV LAP
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.