Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d018207_P001 | |
| Zm00001d052138_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | Zm00001d018207_P001 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | Zm00001d052138_P004 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g009650.1.1 | Tomato | nucleus | 22.66 | 69.23 |
| Zm00001d017383_P001 | Maize | nucleus | 72.3 | 69.07 |
| Zm00001d008206_P001 | Maize | nucleus | 17.99 | 68.49 |
| EES07547 | Sorghum | nucleus | 74.46 | 67.87 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 69.06 | 66.9 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 69.06 | 65.08 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 68.35 | 64.41 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 63.31 | 57.14 |
| Zm00001d023931_P001 | Maize | nucleus | 19.42 | 55.67 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 40.65 | 50.67 |
| Bra013900.1-P | Field mustard | nucleus | 32.01 | 41.4 |
| PGSC0003DMT400037080 | Potato | nucleus | 38.13 | 38.13 |
| CDY32589 | Canola | nucleus | 33.45 | 37.05 |
| KRH35334 | Soybean | nucleus | 35.97 | 37.04 |
| Zm00001d014989_P001 | Maize | nucleus | 41.01 | 37.01 |
| KRH38485 | Soybean | nucleus | 38.13 | 36.43 |
| Solyc03g025870.2.1 | Tomato | nucleus | 36.33 | 36.2 |
| AT5G52260.1 | Thale cress | nucleus | 34.89 | 36.19 |
| KRH09018 | Soybean | nucleus | 37.77 | 36.08 |
| CDY64708 | Canola | nucleus | 33.45 | 36.05 |
| Bra018027.1-P | Field mustard | nucleus | 33.45 | 36.05 |
| CDY50197 | Canola | nucleus | 32.37 | 36.0 |
| CDY38910 | Canola | nucleus | 34.53 | 35.96 |
| Bra029129.1-P | Field mustard | nucleus | 34.53 | 35.96 |
| CDY05881 | Canola | nucleus | 32.73 | 35.27 |
| AT3G48920.1 | Thale cress | nucleus | 33.09 | 35.25 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 37.77 | 35.23 |
| CDX89413 | Canola | nucleus | 33.09 | 34.07 |
| CDX92718 | Canola | nucleus | 32.01 | 33.97 |
| CDX94440 | Canola | nucleus | 31.3 | 33.85 |
| AT4G25560.1 | Thale cress | nucleus | 33.09 | 32.51 |
| KRG91494 | Soybean | nucleus | 36.69 | 30.63 |
| Zm00001d009435_P001 | Maize | nucleus | 26.62 | 29.25 |
| Zm00001d038878_P001 | Maize | nucleus | 31.65 | 27.33 |
| Zm00001d008695_P001 | Maize | nucleus | 25.54 | 25.63 |
| Zm00001d039700_P001 | Maize | nucleus | 21.94 | 25.52 |
| Zm00001d022259_P002 | Maize | nucleus | 31.3 | 24.93 |
| Zm00001d024784_P001 | Maize | nucleus | 22.66 | 24.61 |
| Zm00001d040527_P001 | Maize | nucleus | 24.46 | 24.2 |
| Zm00001d011669_P001 | Maize | nucleus | 20.5 | 23.75 |
| Zm00001d024630_P002 | Maize | nucleus | 30.58 | 23.48 |
| Zm00001d005055_P001 | Maize | nucleus | 19.06 | 23.35 |
| Zm00001d043729_P001 | Maize | nucleus | 18.7 | 22.71 |
| Zm00001d010907_P001 | Maize | nucleus | 32.37 | 21.13 |
| Zm00001d021537_P001 | Maize | nucleus | 22.3 | 20.46 |
| Bra019154.1-P | Field mustard | nucleus | 32.73 | 19.74 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100273393 | MapMan:15.5.2.1 | ProteinID:AQK53929.1 | UniProt:B4FV81 | EMBL:BT041019 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| EMBL:KJ727507 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF748 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00017B7527 | EnsemblPlantsGene:Zm00001d051267 | EnsemblPlants:Zm00001d051267_P001 |
| EnsemblPlants:Zm00001d051267_T001 | SEG:seg | : | : | : | : |
Description
MYB-transcription factor 166myb domain protein 19
Coordinates
chr4:+:151178362..151181128
Molecular Weight (calculated)
29560.2 Da
IEP (calculated)
6.231
GRAVY (calculated)
-0.642
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKACDKPK PSYRKGLWSP EEDQKLRDYI LLHGHGCWSA LPAKAGLQRN GKSCRLRWIN YLRPGLKHGT FSPEEEETVM SLHATLGNKW SRIAKHLPGR
101: TDNEVKNHWN SYLKKRVEGP STPPSNSDDS HCAKPGRGGS TARETGDDRP ADYSGSSELR EPSSSSSPDT SCLTGPPKVM FVDWLDMDCM GGGGGPPGAA
201: AAAAAPGLGA AAGVTSTGDD QVTMDGSASG RADVSLHGTF GDSGGAGCWE FHESFDQMQA AGFCDLLSSI GEYYFGLD
101: TDNEVKNHWN SYLKKRVEGP STPPSNSDDS HCAKPGRGGS TARETGDDRP ADYSGSSELR EPSSSSSPDT SCLTGPPKVM FVDWLDMDCM GGGGGPPGAA
201: AAAAAPGLGA AAGVTSTGDD QVTMDGSASG RADVSLHGTF GDSGGAGCWE FHESFDQMQA AGFCDLLSSI GEYYFGLD
001: MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY LRPGLKRGSF SEEEEETILT LHSSLGNKWS RIAKYLPGRT
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
Arabidopsis Description
AtMYB19MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.