Factsheet for VIT_16s0050g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0059g01420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25560.1	VIT_12s0059g01420.t01	AT2G32950.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009650.1.1	Tomato	nucleus	20.81	68.13
GSMUA_Achr4P25340_001	Banana	nucleus	28.86	60.56
PGSC0003DMT400037080	Potato	nucleus	50.0	53.6
KRH35334	Soybean	nucleus	47.99	52.96
Solyc03g025870.2.1	Tomato	nucleus	47.32	50.54
KRH09018	Soybean	nucleus	49.33	50.52
KRH38485	Soybean	nucleus	47.99	49.14
KRG91494	Soybean	nucleus	47.32	42.34
TraesCS2D01G366800.1	Wheat	nucleus	38.93	42.03
Bra013900.1-P	Field mustard	nucleus	30.2	41.86
TraesCS2B01G387300.1	Wheat	nucleus	38.26	41.61
TraesCS2A01G370300.1	Wheat	nucleus	38.59	41.52
GSMUA_Achr4P29410_001	Banana	nucleus	38.59	41.22
AT3G48920.1	Thale cress	nucleus	35.57	40.61
TraesCS2B01G387700.1	Wheat	nucleus	37.25	40.51
TraesCS2B01G387800.1	Wheat	nucleus	37.92	40.5
TraesCS2A01G370700.1	Wheat	nucleus	37.58	40.43
TraesCS2D01G367000.1	Wheat	nucleus	37.92	40.21
CDY64708	Canola	nucleus	34.56	39.92
TraesCS2D01G366900.1	Wheat	nucleus	37.58	39.58
Os04t0532800-01	Rice	nucleus	36.24	39.56
Bra018027.1-P	Field mustard	nucleus	34.23	39.53
TraesCS2A01G370400.1	Wheat	nucleus	37.25	39.22
TraesCS2B01G387500.1	Wheat	nucleus	37.25	39.22
CDY05881	Canola	nucleus	33.89	39.15
TraesCS6A01G236700.1	Wheat	nucleus	37.25	38.68
CDY32589	Canola	nucleus	32.55	38.65
AT4G25560.1	Thale cress	nucleus	36.58	38.52
TraesCS6D01G219300.1	Wheat	nucleus	37.92	38.31
GSMUA_Achr4P11960_001	Banana	nucleus	31.54	38.21
AT5G52260.1	Thale cress	nucleus	34.23	38.06
GSMUA_Achr2P11450_001	Banana	nucleus	39.26	37.99
Zm00001d051267_P001	Maize	nucleus	35.23	37.77
GSMUA_Achr8P11340_001	Banana	nucleus	35.23	37.77
GSMUA_Achr1P17480_001	Banana	nucleus	34.56	37.73
TraesCS6B01G265200.1	Wheat	nucleus	37.25	37.63
CDX94440	Canola	nucleus	32.21	37.35
CDY50197	Canola	nucleus	31.21	37.2
Bra029129.1-P	Field mustard	nucleus	33.22	37.08
CDY38910	Canola	nucleus	33.22	37.08
EES11177	Sorghum	nucleus	36.58	36.58
Zm00001d017383_P001	Maize	nucleus	35.57	36.43
HORVU2Hr1G091590.1	Barley	nucleus	36.91	36.18
HORVU6Hr1G060610.3	Barley	nucleus	37.25	36.04
CDX92718	Canola	nucleus	31.54	35.88
EES06150	Sorghum	nucleus	35.57	35.45
HORVU6Hr1G060600.2	Barley	mitochondrion	26.51	35.43
CDX89413	Canola	nucleus	31.88	35.19
TraesCS6D01G043600.1	Wheat	nucleus	37.25	35.13
TraesCS6B01G053100.1	Wheat	nucleus	36.24	35.06
HORVU6Hr1G007010.2	Barley	nucleus	36.58	34.82
Zm00001d014989_P001	Maize	nucleus	35.91	34.74
EES07547	Sorghum	nucleus	34.56	33.77
GSMUA_Achr4P05410_001	Banana	nucleus	32.55	33.45
TraesCS6A01G037700.1	Wheat	nucleus	36.58	30.7
VIT_02s0025g00320.t01	Wine grape	nucleus	29.53	28.95
VIT_05s0020g01100.t01	Wine grape	nucleus	28.52	28.62
VIT_09s0002g01670.t01	Wine grape	nucleus	28.52	27.51
VIT_19s0085g00940.t01	Wine grape	nucleus	29.87	26.41
VIT_06s0004g02110.t01	Wine grape	nucleus	28.52	26.15
VIT_01s0010g00410.t01	Wine grape	nucleus	30.2	26.09
VIT_17s0000g09080.t01	Wine grape	nucleus	30.87	25.34
VIT_13s0064g00960.t01	Wine grape	nucleus	22.82	23.53
VIT_14s0060g00240.t01	Wine grape	nucleus	31.54	21.41
VIT_07s0005g02480.t01	Wine grape	nucleus	31.88	21.06
Bra019154.1-P	Field mustard	nucleus	32.55	21.04

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100241951	wikigene:100241951	MapMan:15.5.2.1	ProteinID:CBI22756	ProteinID:CBI22756.3
UniProt:E0CUH5	EMBL:FN595243	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100241951	wikigene:LOC100241951	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF563	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CDCE6	ArrayExpress:VIT_16s0050g00050
EnsemblPlantsGene:VIT_16s0050g00050	EnsemblPlants:VIT_16s0050g00050.t01	RefSeq:XP_002267853	RefSeq:XP_002267853.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:16907193..16908873

Molecular Weight (calculated)

33898.8 Da

IEP (calculated)

5.994

GRAVY (calculated)

-0.660

Length

298 amino acids

Sequence
(BLAST)

001: MGCNSLEKSK TKPKHRKGLW SPEEDARLRN YVLKYGLGCW SSVPVNAGLQ RNGKSCRLRW INYLRPGLKR GMFTIEEEET IMALHRLLGN KWSQIAQNFP
101: GRTDNEIKNY WHSCLKKKVV KAQEMEVHMN SQCINSNSQS IDSSTSQEKP SIQLPGFESF ENMKGSSSTD TDQSIPQMLD CPRVDTQESP LPKILFAEWL
201: SLDHIYGQLF VNSGESVISK DTLDQHDPTF QDNFTHGFLL NEESYVGELH HGLSNDSSSD MFSPQFKFES QTPGSGICDF VYGDEICSDF NMNGHVMY

Best Arabidopsis Sequence Match ( AT4G25560.1 )
(BLAST)

001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT

Arabidopsis Description

LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.