Factsheet for VIT_13s0064g00960.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023931_P001	Maize	nucleus	19.03	56.7
KRH27485	Soybean	nucleus	52.94	48.57
VIT_06s0004g02110.t01	Wine grape	nucleus	53.63	47.69
KRH20828	Soybean	nucleus	50.52	46.95
KRG93751	Soybean	nucleus	54.33	46.73
GSMUA_Achr8P31350_001	Banana	nucleus	44.98	46.59
GSMUA_AchrUn_...	Banana	nucleus	44.29	45.23
GSMUA_Achr2P07780_001	Banana	nucleus	46.37	45.12
PGSC0003DMT400017709	Potato	nucleus	55.36	45.07
Solyc01g087130.2.1	Tomato	nucleus	54.33	44.6
KRH18309	Soybean	nucleus	52.6	44.57
AT3G08500.1	Thale cress	nucleus	48.79	41.11
Bra001284.1-P	Field mustard	nucleus	47.75	40.59
CDX74013	Canola	nucleus	47.75	40.59
Bra029696.1-P	Field mustard	nucleus	46.71	40.54
CDY35982	Canola	nucleus	46.71	40.3
CDY27999	Canola	nucleus	46.02	39.7
CDY70536	Canola	nucleus	47.06	39.65
TraesCS5A01G101000.1	Wheat	nucleus	45.67	33.93
TraesCS5D01G113300.1	Wheat	nucleus	45.67	33.93
TraesCS5B01G105900.1	Wheat	nucleus	43.94	32.56
EES17106	Sorghum	nucleus	44.64	30.86
HORVU5Hr1G027750.1	Barley	nucleus	44.98	28.02
VIT_05s0020g01100.t01	Wine grape	nucleus	28.72	27.95
VIT_09s0002g01670.t01	Wine grape	nucleus	26.3	24.6
VIT_17s0000g09080.t01	Wine grape	nucleus	28.72	22.86
VIT_16s0050g00050.t01	Wine grape	nucleus	23.53	22.82
VIT_02s0025g00320.t01	Wine grape	nucleus	23.88	22.7
VIT_01s0010g00410.t01	Wine grape	nucleus	26.99	22.61
VIT_19s0085g00940.t01	Wine grape	nucleus	25.61	21.96
VIT_07s0005g02480.t01	Wine grape	nucleus	31.83	20.4
VIT_14s0060g00240.t01	Wine grape	nucleus	30.45	20.05

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100246605	wikigene:100246605	MapMan:15.5.2.1	ProteinID:CBI24882	ProteinID:CBI24882.3
UniProt:D7T301	EMBL:FN595509	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100246605	wikigene:LOC100246605	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF915	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CA957	ArrayExpress:VIT_13s0064g00960
EnsemblPlantsGene:VIT_13s0064g00960	EnsemblPlants:VIT_13s0064g00960.t01	RefSeq:XP_002275467	RefSeq:XP_002275467.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:22837089..22838659

Molecular Weight (calculated)

32533.2 Da

IEP (calculated)

5.023

GRAVY (calculated)

-0.651

Length

289 amino acids

Sequence
(BLAST)

001: MSYMLRNGQG CWSDIARNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIIHLHSIL GNRWSQIAAR LPGRTDNEIK NFWNSTIKKR LKNSLQTHSP
101: NDCHDSSLEP RVVVDNINAM GMGVGGSSGM LLSMHEHEMM NMYMDSSSSS FSSMNTMLTS NHLDNPFPLL DNRHDQMVFS LPNCMAKPEM TDEFDGRYGV
201: TGGGNMGVER EISIPGSQSN STTEENNGAT QNEYYTIDMK NNNSKVEESD NIFGVGNHWQ GENMGIGEWD LEGLLENASS FPFLDFQLQ

Best Arabidopsis Sequence Match ( AT3G08500.1 )
(BLAST)

001: MMMRKPDITT IRDKGKPNHA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD

Arabidopsis Description

MYB83Transcription factor MYB83 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.