Factsheet for VIT_07s0005g02480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P19560_001	Banana	nucleus	37.47	59.72
KRH69136	Soybean	nucleus	55.21	57.37
GSMUA_AchrUn_...	Banana	nucleus	34.81	57.09
KRH68350	Soybean	nucleus	52.77	56.94
GSMUA_Achr11P...	Banana	nucleus	29.27	56.65
KRH33667	Soybean	nucleus	56.32	55.7
VIT_14s0060g00240.t01	Wine grape	nucleus	52.11	53.53
GSMUA_Achr2P18440_001	Banana	nucleus	42.35	52.33
GSMUA_Achr1P25120_001	Banana	nucleus	41.69	52.22
GSMUA_Achr1P18990_001	Banana	nucleus	37.92	51.2
GSMUA_Achr2P01830_001	Banana	nucleus	34.81	51.14
GSMUA_Achr7P17250_001	Banana	nucleus	38.8	51.02
GSMUA_Achr3P12200_001	Banana	nucleus	40.58	50.83
GSMUA_Achr3P24580_001	Banana	nucleus	38.36	50.29
PGSC0003DMT400040774	Potato	nucleus	45.23	50.12
GSMUA_Achr8P18730_001	Banana	nucleus	40.8	49.73
PGSC0003DMT400047076	Potato	nucleus	46.78	49.53
VIT_05s0020g01100.t01	Wine grape	nucleus	32.59	49.49
GSMUA_Achr5P18400_001	Banana	nucleus	40.8	49.07
Solyc01g102340.2.1	Tomato	nucleus	46.34	49.06
KRG96619	Soybean	plastid, vacuole	53.44	48.69
Solyc10g044680.1.1	Tomato	nucleus	42.79	48.49
GSMUA_Achr2P07930_001	Banana	nucleus	40.8	48.29
GSMUA_Achr11P...	Banana	nucleus	36.59	44.0
Bra036317.1-P	Field mustard	nucleus	31.26	41.96
CDY58217	Canola	nucleus	31.26	41.96
CDY07124	Canola	nucleus	31.26	41.96
VIT_17s0000g09080.t01	Wine grape	nucleus	33.7	41.87
AT4G01680.2	Thale cress	nucleus	31.71	41.09
VIT_09s0002g01670.t01	Wine grape	nucleus	24.61	35.92
VIT_02s0025g00320.t01	Wine grape	nucleus	23.73	35.2
VIT_19s0085g00940.t01	Wine grape	nucleus	25.72	34.42
VIT_06s0004g02110.t01	Wine grape	nucleus	24.17	33.54
VIT_01s0010g00410.t01	Wine grape	nucleus	25.28	33.04
VIT_16s0050g00050.t01	Wine grape	nucleus	21.06	31.88
VIT_13s0064g00960.t01	Wine grape	nucleus	20.4	31.83

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100247039	wikigene:100247039	MapMan:15.5.2.1	ProteinID:CCB60070	ProteinID:CCB60070.1
UniProt:F6HZF5	EMBL:FN596502	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010119	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	EntrezGene:LOC100247039	wikigene:LOC100247039	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF465	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGR:TC70736
UniParc:UPI00015CA931	ArrayExpress:VIT_07s0005g02480	EnsemblPlantsGene:VIT_07s0005g02480	EnsemblPlants:VIT_07s0005g02480.t01	unigene:Vvi.5845	RefSeq:XP_002281027
RefSeq:XP_002281027.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:4830114..4832232

Molecular Weight (calculated)

50232.4 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.704

Length

451 amino acids

Sequence
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGTF SLQEENLIIE LHSVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS CLKKKLRQRG IDPNTHKPLS EVENREDSNP PTDSQDKASG VSSELNLLKV DNSKPEAALL EQRSSSIATR GYGMEVEGSS SSKTINSNNN
201: NNSNSNLMSP TPNKDFFLDR FMISHQENST GCQPSDVVGY LAPQQLNYPS NARLSINPTQ PLWFSQSSKT LDMNSEFSSN AVSSVLSSVT SSLLPSPMPY
301: KPSIPFHSDN PSIPSFTLSG SRFWDAGAST NSSNSSSGSS SSAELQSNSS FFENSIFPWG LADCSTSDKG AQIHIIESEP EDIKWPEYLQ NPFLMAAALQ
401: NQTPQPLYNE IKSETHFITE TSSAMWAHSQ QQQEHLQAPD IQRLPATFGH I

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.