Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400072522 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | PGSC0003DMT400072522 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g044680.1.1 | Tomato | nucleus | 89.43 | 91.46 |
| Zm00001d008206_P001 | Maize | nucleus | 15.23 | 84.93 |
| CDY05331 | Canola | nucleus | 26.54 | 81.82 |
| CDY05516 | Canola | nucleus | 26.29 | 81.06 |
| GSMUA_Achr11P... | Banana | nucleus | 30.96 | 54.08 |
| PGSC0003DMT400047076 | Potato | nucleus | 56.02 | 53.52 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 36.12 | 51.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.64 | 51.27 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 53.32 | 49.43 |
| CDX93504 | Canola | nucleus | 34.89 | 48.3 |
| CDY50901 | Canola | nucleus | 34.89 | 47.49 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 39.07 | 46.36 |
| CDY22635 | Canola | nucleus | 34.89 | 45.95 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 34.64 | 45.93 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 40.54 | 45.83 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 42.75 | 45.67 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 40.79 | 45.48 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 41.28 | 45.41 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 38.33 | 45.35 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 50.12 | 45.23 |
| Bra020016.1-P | Field mustard | nucleus | 36.85 | 45.18 |
| CDY06359 | Canola | nucleus | 34.15 | 45.13 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 36.85 | 44.91 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 41.03 | 44.53 |
| CDY32188 | Canola | nucleus | 36.61 | 44.35 |
| AT1G57560.1 | Thale cress | nucleus | 34.15 | 44.27 |
| Bra030783.1-P | Field mustard | nucleus | 37.35 | 44.06 |
| Bra031669.1-P | Field mustard | nucleus | 35.38 | 44.04 |
| CDY31082 | Canola | nucleus | 37.35 | 43.93 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 38.57 | 43.61 |
| KRG90431 | Soybean | nucleus | 45.7 | 43.46 |
| KRH33726 | Soybean | nucleus | 45.7 | 43.36 |
| KRH69136 | Soybean | nucleus | 46.19 | 43.32 |
| Zm00001d040527_P001 | Maize | nucleus | 29.24 | 42.35 |
| KRG96660 | Soybean | nucleus | 44.96 | 42.17 |
| GSMUA_Achr11P... | Banana | nucleus | 38.57 | 41.87 |
| KRH68389 | Soybean | nucleus | 43.0 | 41.87 |
| AT1G09540.1 | Thale cress | nucleus | 37.59 | 41.8 |
| KRH33667 | Soybean | nucleus | 46.68 | 41.67 |
| EES02806 | Sorghum | nucleus | 43.0 | 40.98 |
| Zm00001d024784_P001 | Maize | nucleus | 25.55 | 40.62 |
| Os05t0140100-01 | Rice | nucleus | 42.51 | 40.52 |
| KRH68350 | Soybean | nucleus | 41.52 | 40.43 |
| Bra036588.1-P | Field mustard | nucleus | 32.92 | 40.0 |
| CDX87038 | Canola | nucleus | 33.17 | 39.94 |
| CDY07124 | Canola | nucleus | 32.92 | 39.88 |
| CDY58217 | Canola | nucleus | 32.92 | 39.88 |
| Bra036317.1-P | Field mustard | nucleus | 32.92 | 39.88 |
| OQU77376 | Sorghum | nucleus | 42.01 | 39.77 |
| CDY68301 | Canola | nucleus | 32.68 | 39.7 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 41.52 | 39.39 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 41.52 | 39.21 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 41.28 | 39.16 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 41.28 | 39.07 |
| Zm00001d010907_P001 | Maize | nucleus | 40.79 | 38.97 |
| Os01t0285300-01 | Rice | nucleus | 40.54 | 38.55 |
| AT5G26660.1 | Thale cress | nucleus | 33.17 | 38.35 |
| PGSC0003DMT400069644 | Potato | nucleus | 29.48 | 38.1 |
| PGSC0003DMT400046645 | Potato | nucleus | 30.22 | 37.85 |
| PGSC0003DMT400087467 | Potato | nucleus | 25.55 | 37.82 |
| AT4G01680.2 | Thale cress | nucleus | 32.19 | 37.64 |
| CDX88230 | Canola | nucleus | 32.68 | 37.36 |
| CDX80576 | Canola | nucleus | 32.68 | 37.25 |
| PGSC0003DMT400018897 | Potato | nucleus | 27.27 | 34.69 |
| KRG96619 | Soybean | plastid, vacuole | 41.52 | 34.14 |
| Bra009910.1-P | Field mustard | nucleus | 26.29 | 32.42 |
| PGSC0003DMT400037080 | Potato | nucleus | 20.39 | 29.86 |
| PGSC0003DMT400018995 | Potato | nucleus | 25.55 | 29.63 |
| Bra020526.1-P | Field mustard | nucleus | 31.94 | 29.55 |
| PGSC0003DMT400017709 | Potato | nucleus | 24.32 | 27.89 |
| CDY05517 | Canola | plastid | 4.42 | 10.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400040774 | EnsemblPlantsGene:PGSC0003DMG400015767 | EntrezGene:102599422 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF910 | PFAM:PF00249 | PFscan:PS51294 | PGSC:PGSC0003DMG400015767 | RefSeq:XP_006339916.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00029570D6 | UniProt:M1BAE0 | MapMan:15.5.2.1 | : |
Description
Myb-like transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400015767]
Coordinates
chr10:+:18144786..18146378
Molecular Weight (calculated)
46056.7 Da
IEP (calculated)
7.623
GRAVY (calculated)
-0.710
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPCCYKQK LRKGLWSPEE DEKLINHITK YGHGCWSSVP KLAALQRCGK SCRLRWINYL RPDLKRGTFS QQEENLIIQL HSLLGNKWSQ IASRLPGRTD
101: NEIKNLWNSS IKKKLRQKGI DPDTHNKLLS VVENEEKVSA ISMNIEKASE GSSELNFVES HENSNYGIQT DKPKSSLVTM TMDGYPSNTT TSAAPLTHEF
201: FLERFVTTHE TSTASCNKPL ELASYLSFRQ LNYGSNIGLS MNSNTNNLLF NSKNSEMFTH QFNSTITNDN ILTSPIAAVA SNDSMRNGNS TSIELQRNSS
301: FFDSNAFSWG TADYDKSEKE ANIHPSVTDP EDIKWFEYLH TQLLPGNAIT NNQITQDLYS EKSSIQFTTQ GSLSTWLQNH QQQPSLQTAN IYNKHSQRIP
401: DAFGQFS
101: NEIKNLWNSS IKKKLRQKGI DPDTHNKLLS VVENEEKVSA ISMNIEKASE GSSELNFVES HENSNYGIQT DKPKSSLVTM TMDGYPSNTT TSAAPLTHEF
201: FLERFVTTHE TSTASCNKPL ELASYLSFRQ LNYGSNIGLS MNSNTNNLLF NSKNSEMFTH QFNSTITNDN ILTSPIAAVA SNDSMRNGNS TSIELQRNSS
301: FFDSNAFSWG TADYDKSEKE ANIHPSVTDP EDIKWFEYLH TQLLPGNAIT NNQITQDLYS EKSSIQFTTQ GSLSTWLQNH QQQPSLQTAN IYNKHSQRIP
401: DAFGQFS
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.