Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400072522 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | PGSC0003DMT400072522 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g102340.2.1 | Tomato | nucleus | 93.66 | 93.66 |
| Zm00001d008206_P001 | Maize | nucleus | 15.02 | 87.67 |
| CDY05331 | Canola | nucleus | 26.29 | 84.85 |
| CDY05516 | Canola | nucleus | 26.06 | 84.09 |
| GSMUA_Achr11P... | Banana | nucleus | 31.22 | 57.08 |
| PGSC0003DMT400040774 | Potato | nucleus | 53.52 | 56.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.15 | 56.0 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 35.92 | 54.06 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 36.62 | 50.81 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 39.67 | 50.6 |
| CDY06359 | Canola | nucleus | 36.15 | 50.0 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 40.14 | 49.85 |
| CDY22635 | Canola | nucleus | 36.15 | 49.84 |
| CDX93504 | Canola | nucleus | 34.27 | 49.66 |
| CDY50901 | Canola | nucleus | 34.74 | 49.5 |
| AT1G57560.1 | Thale cress | nucleus | 36.15 | 49.04 |
| Bra031669.1-P | Field mustard | nucleus | 37.56 | 48.93 |
| Bra020016.1-P | Field mustard | nucleus | 37.09 | 47.59 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 48.59 | 47.15 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 40.38 | 47.12 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 49.53 | 46.78 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 39.44 | 46.67 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 39.2 | 46.39 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 40.14 | 46.22 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 41.31 | 46.19 |
| CDY32188 | Canola | nucleus | 36.38 | 46.13 |
| Bra030783.1-P | Field mustard | nucleus | 37.09 | 45.8 |
| CDY31082 | Canola | nucleus | 37.09 | 45.66 |
| KRG90431 | Soybean | nucleus | 45.77 | 45.56 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 36.38 | 45.06 |
| KRH68389 | Soybean | nucleus | 44.13 | 44.98 |
| Zm00001d024784_P001 | Maize | nucleus | 27.0 | 44.92 |
| AT1G09540.1 | Thale cress | nucleus | 38.5 | 44.81 |
| KRH33726 | Soybean | nucleus | 44.84 | 44.52 |
| KRG96660 | Soybean | nucleus | 44.84 | 44.01 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 38.73 | 44.0 |
| Zm00001d040527_P001 | Maize | nucleus | 28.4 | 43.06 |
| GSMUA_Achr11P... | Banana | nucleus | 37.56 | 42.67 |
| PGSC0003DMT400069644 | Potato | nucleus | 31.46 | 42.54 |
| PGSC0003DMT400046645 | Potato | nucleus | 32.39 | 42.46 |
| KRH68350 | Soybean | nucleus | 41.55 | 42.34 |
| Os05t0140100-01 | Rice | nucleus | 41.78 | 41.69 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 41.31 | 41.03 |
| KRH69136 | Soybean | nucleus | 41.78 | 41.01 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 41.31 | 40.93 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 41.31 | 40.84 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 41.08 | 40.79 |
| EES02806 | Sorghum | nucleus | 40.85 | 40.75 |
| OQU77376 | Sorghum | nucleus | 40.85 | 40.47 |
| Zm00001d010907_P001 | Maize | nucleus | 40.14 | 40.14 |
| KRH33667 | Soybean | nucleus | 42.96 | 40.13 |
| CDY58217 | Canola | nucleus | 31.46 | 39.88 |
| CDY07124 | Canola | nucleus | 31.46 | 39.88 |
| Bra036317.1-P | Field mustard | nucleus | 31.46 | 39.88 |
| CDY68301 | Canola | nucleus | 30.99 | 39.4 |
| Bra036588.1-P | Field mustard | nucleus | 30.99 | 39.4 |
| CDX87038 | Canola | nucleus | 31.22 | 39.35 |
| PGSC0003DMT400087467 | Potato | nucleus | 25.35 | 39.27 |
| Os01t0285300-01 | Rice | nucleus | 39.2 | 39.02 |
| AT5G26660.1 | Thale cress | nucleus | 31.92 | 38.64 |
| AT4G01680.2 | Thale cress | nucleus | 31.46 | 38.51 |
| CDX88230 | Canola | nucleus | 30.75 | 36.8 |
| CDX80576 | Canola | nucleus | 30.75 | 36.69 |
| KRG96619 | Soybean | plastid, vacuole | 41.78 | 35.96 |
| PGSC0003DMT400018897 | Potato | nucleus | 26.53 | 35.31 |
| PGSC0003DMT400037080 | Potato | nucleus | 22.07 | 33.81 |
| Bra009910.1-P | Field mustard | nucleus | 24.65 | 31.82 |
| PGSC0003DMT400018995 | Potato | nucleus | 25.35 | 30.77 |
| PGSC0003DMT400017709 | Potato | nucleus | 25.59 | 30.7 |
| Bra020526.1-P | Field mustard | nucleus | 31.46 | 30.45 |
| CDY05517 | Canola | plastid | 4.69 | 11.7 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102603892 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1BK40 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400018279 | PGSC:PGSC0003DMG400018279 | EnsemblPlants:PGSC0003DMT400047076 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF910 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00029508F3 | RefSeq:XP_006358516.1 | SEG:seg |
Description
MYB domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400018279]
Coordinates
chr1:+:79062872..79064724
Molecular Weight (calculated)
47678.1 Da
IEP (calculated)
7.367
GRAVY (calculated)
-0.744
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIAARLPGRT
101: DNEIKNLWNS SIKKKLRQRG IDPNTHKPLS EIESEEKASA NSNNKNNDKV SESSNNEFNF VEGHENGFST EKPIKPAVSS MINTLERYPL IHEANNIAPP
201: THEFFTTNCK SPDLSGYLSF HNYTPNTNNI LFNTKNSSSA AAAADNLVSD HQFNCSNLPN ATFSTMSNSI LSTTISPLAR TFNINKFQNW EACTISSNGS
301: NNSNGTSNSI ELQSNCSFFD NNAAAAFAWG SAAAADGSGK PEREEIKWSE YLQTPFSLGV NNNTIETHHQ IPPHHELYDG ETKSETQFMT QGSWLQNQTP
401: QTSLQTADLY SNNNFQRLPA VFGQFS
101: DNEIKNLWNS SIKKKLRQRG IDPNTHKPLS EIESEEKASA NSNNKNNDKV SESSNNEFNF VEGHENGFST EKPIKPAVSS MINTLERYPL IHEANNIAPP
201: THEFFTTNCK SPDLSGYLSF HNYTPNTNNI LFNTKNSSSA AAAADNLVSD HQFNCSNLPN ATFSTMSNSI LSTTISPLAR TFNINKFQNW EACTISSNGS
301: NNSNGTSNSI ELQSNCSFFD NNAAAAFAWG SAAAADGSGK PEREEIKWSE YLQTPFSLGV NNNTIETHHQ IPPHHELYDG ETKSETQFMT QGSWLQNQTP
401: QTSLQTADLY SNNNFQRLPA VFGQFS
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.