Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P11740_001 | |
| GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 20.2 | 84.93 |
| CDY05516 | Canola | nucleus | 35.83 | 83.33 |
| CDY05331 | Canola | nucleus | 35.83 | 83.33 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 26.71 | 57.75 |
| GSMUA_Achr11P... | Banana | nucleus | 40.07 | 52.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.6 | 50.91 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 46.58 | 50.53 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 56.03 | 50.0 |
| AT1G57560.1 | Thale cress | nucleus | 47.88 | 46.82 |
| CDY22635 | Canola | nucleus | 45.93 | 45.63 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 49.51 | 45.51 |
| CDY06359 | Canola | nucleus | 45.28 | 45.13 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 51.47 | 43.89 |
| Bra031669.1-P | Field mustard | nucleus | 46.58 | 43.73 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 47.23 | 42.27 |
| Zm00001d024784_P001 | Maize | nucleus | 34.85 | 41.8 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 51.79 | 41.73 |
| CDX93504 | Canola | nucleus | 39.74 | 41.5 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 49.19 | 41.37 |
| CDY50901 | Canola | nucleus | 40.07 | 41.14 |
| Zm00001d040527_P001 | Maize | nucleus | 37.46 | 40.93 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 40.72 | 40.72 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 47.56 | 40.56 |
| CDY32188 | Canola | nucleus | 44.3 | 40.48 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 41.04 | 40.0 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 47.88 | 39.73 |
| Bra030783.1-P | Field mustard | nucleus | 44.63 | 39.71 |
| CDY31082 | Canola | nucleus | 44.63 | 39.6 |
| Bra020016.1-P | Field mustard | nucleus | 42.67 | 39.46 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 39.09 | 39.22 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 46.25 | 37.87 |
| AT1G09540.1 | Thale cress | nucleus | 44.95 | 37.7 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 52.12 | 37.3 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 52.12 | 37.3 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 52.12 | 37.21 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 52.12 | 37.12 |
| GSMUA_Achr11P... | Banana | nucleus | 45.28 | 37.07 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 36.81 | 37.05 |
| Os05t0140100-01 | Rice | nucleus | 51.47 | 37.0 |
| CDY07124 | Canola | nucleus | 40.39 | 36.9 |
| CDY68301 | Canola | nucleus | 40.07 | 36.72 |
| Bra036588.1-P | Field mustard | nucleus | 40.07 | 36.72 |
| CDX87038 | Canola | nucleus | 40.39 | 36.69 |
| PGSC0003DMT400047076 | Potato | nucleus | 50.81 | 36.62 |
| CDY58217 | Canola | nucleus | 40.07 | 36.61 |
| Bra036317.1-P | Field mustard | nucleus | 40.07 | 36.61 |
| OQU77376 | Sorghum | nucleus | 51.14 | 36.51 |
| EES02806 | Sorghum | nucleus | 50.49 | 36.3 |
| Solyc01g102340.2.1 | Tomato | nucleus | 50.16 | 36.15 |
| Os01t0285300-01 | Rice | nucleus | 50.16 | 35.98 |
| Zm00001d010907_P001 | Maize | nucleus | 49.84 | 35.92 |
| KRH69136 | Soybean | nucleus | 50.49 | 35.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.9 | 35.69 |
| AT5G26660.1 | Thale cress | nucleus | 40.72 | 35.51 |
| KRH68350 | Soybean | nucleus | 48.21 | 35.41 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 31.92 | 35.13 |
| AT4G01680.2 | Thale cress | nucleus | 39.74 | 35.06 |
| KRG90431 | Soybean | nucleus | 48.86 | 35.05 |
| CDX80576 | Canola | nucleus | 40.72 | 35.01 |
| KRH33726 | Soybean | nucleus | 48.86 | 34.97 |
| CDX88230 | Canola | nucleus | 40.39 | 34.83 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 51.14 | 34.81 |
| PGSC0003DMT400040774 | Potato | nucleus | 45.93 | 34.64 |
| KRH68389 | Soybean | nucleus | 46.91 | 34.45 |
| KRH33667 | Soybean | nucleus | 51.14 | 34.43 |
| Solyc10g044680.1.1 | Tomato | nucleus | 44.63 | 34.42 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 49.19 | 34.4 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 33.88 | 33.55 |
| KRG96660 | Soybean | nucleus | 46.91 | 33.18 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 32.25 | 33.11 |
| GSMUA_Achr10P... | Banana | nucleus | 31.6 | 32.66 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 29.64 | 32.62 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 33.55 | 32.29 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 28.99 | 32.01 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 30.94 | 31.99 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 32.25 | 31.83 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 25.41 | 31.71 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 33.55 | 31.5 |
| KRG96619 | Soybean | plastid, vacuole | 48.86 | 30.3 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 30.94 | 30.16 |
| Bra009910.1-P | Field mustard | nucleus | 30.94 | 28.79 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 28.66 | 28.57 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 25.08 | 28.21 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 26.38 | 27.93 |
| Bra020526.1-P | Field mustard | nucleus | 39.74 | 27.73 |
| CDY05517 | Canola | plastid | 3.91 | 7.02 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P01830_001 | EnsemblPlants:GSMUA_Achr2T01830_001 | EnsemblPlantsGene:GSMUA_Achr2G01830_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002952D0A | UniProt:M0S4C4 | MapMan:15.5.2.1 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G01830_001]
Coordinates
chr2:+:7701667..7702741
Molecular Weight (calculated)
34242.3 Da
IEP (calculated)
6.986
GRAVY (calculated)
-0.656
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSSCYKP KLRKGLWSPE EDEKLLNHIT RFGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGTF SQQEEDLIVD LHAVLGNRWS QIASQLPGRT
101: DNEIKNFWNS SLKKKLQQSG VDPSTHKPLD QADKASGSSE SKLFISDGSH TGSFRHSPYS SNCGGEEKAS DGPLWFEQNC RLLNVIPELS SLQLKPMLHL
201: PHDTLLTPSQ FLEAGNPSNS SASSVNGSIG VELQSSILPW PELLPHNLEE EPGDLKWSEY LNGAAITSAE IRCSYGVGKG GEELDPWHQD QQLLHPSLMH
301: GKNFQIQ
101: DNEIKNFWNS SLKKKLQQSG VDPSTHKPLD QADKASGSSE SKLFISDGSH TGSFRHSPYS SNCGGEEKAS DGPLWFEQNC RLLNVIPELS SLQLKPMLHL
201: PHDTLLTPSQ FLEAGNPSNS SASSVNGSIG VELQSSILPW PELLPHNLEE EPGDLKWSEY LNGAAITSAE IRCSYGVGKG GEELDPWHQD QQLLHPSLMH
301: GKNFQIQ
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.