Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P11740_001 | |
| GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 22.18 | 83.56 |
| CDY05331 | Canola | nucleus | 40.0 | 83.33 |
| CDY05516 | Canola | nucleus | 39.64 | 82.58 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 29.45 | 57.04 |
| GSMUA_Achr11P... | Banana | nucleus | 48.0 | 56.65 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 52.0 | 50.53 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 57.82 | 47.6 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 63.27 | 47.03 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 63.27 | 46.4 |
| GSMUA_Achr11P... | Banana | nucleus | 63.27 | 46.4 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 57.82 | 46.36 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 60.36 | 46.11 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 50.91 | 45.6 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 60.36 | 45.48 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 56.36 | 45.06 |
| CDX93504 | Canola | nucleus | 47.27 | 44.22 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 60.73 | 43.83 |
| CDY50901 | Canola | nucleus | 46.91 | 43.14 |
| CDY06359 | Canola | nucleus | 47.64 | 42.53 |
| Bra020016.1-P | Field mustard | nucleus | 51.27 | 42.47 |
| CDY22635 | Canola | nucleus | 47.64 | 42.39 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 55.27 | 42.22 |
| AT1G57560.1 | Thale cress | nucleus | 47.64 | 41.72 |
| CDY32188 | Canola | nucleus | 50.55 | 41.37 |
| Zm00001d040527_P001 | Maize | nucleus | 42.18 | 41.28 |
| Bra031669.1-P | Field mustard | nucleus | 48.73 | 40.98 |
| Bra030783.1-P | Field mustard | nucleus | 50.91 | 40.58 |
| CDY31082 | Canola | nucleus | 50.91 | 40.46 |
| Zm00001d024784_P001 | Maize | nucleus | 37.45 | 40.23 |
| AT1G09540.1 | Thale cress | nucleus | 53.09 | 39.89 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 42.91 | 38.44 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 60.36 | 37.81 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 43.27 | 37.78 |
| Bra036588.1-P | Field mustard | nucleus | 45.82 | 37.61 |
| Os01t0285300-01 | Rice | nucleus | 58.18 | 37.38 |
| CDY68301 | Canola | nucleus | 45.45 | 37.31 |
| CDX87038 | Canola | nucleus | 45.82 | 37.28 |
| EES02806 | Sorghum | nucleus | 57.82 | 37.24 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 41.09 | 36.93 |
| Os05t0140100-01 | Rice | nucleus | 57.09 | 36.77 |
| OQU77376 | Sorghum | nucleus | 57.45 | 36.74 |
| KRG96660 | Soybean | nucleus | 57.45 | 36.41 |
| Zm00001d010907_P001 | Maize | nucleus | 56.36 | 36.38 |
| PGSC0003DMT400047076 | Potato | nucleus | 56.0 | 36.15 |
| Solyc01g102340.2.1 | Tomato | nucleus | 55.64 | 35.92 |
| KRH33726 | Soybean | nucleus | 56.0 | 35.9 |
| KRH68389 | Soybean | nucleus | 54.55 | 35.89 |
| KRG90431 | Soybean | nucleus | 55.27 | 35.51 |
| AT5G26660.1 | Thale cress | nucleus | 45.45 | 35.51 |
| Bra036317.1-P | Field mustard | nucleus | 43.27 | 35.42 |
| CDY58217 | Canola | nucleus | 43.27 | 35.42 |
| CDY07124 | Canola | nucleus | 43.27 | 35.42 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 39.27 | 35.41 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 55.27 | 35.35 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 54.91 | 35.2 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 54.91 | 35.2 |
| KRH68350 | Soybean | nucleus | 53.45 | 35.17 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 35.64 | 35.13 |
| CDX88230 | Canola | nucleus | 45.45 | 35.11 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 54.91 | 35.03 |
| CDX80576 | Canola | nucleus | 45.45 | 35.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.0 | 34.98 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 57.09 | 34.81 |
| PGSC0003DMT400040774 | Potato | nucleus | 51.27 | 34.64 |
| AT4G01680.2 | Thale cress | nucleus | 43.27 | 34.2 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 40.36 | 33.95 |
| Solyc10g044680.1.1 | Tomato | nucleus | 49.09 | 33.92 |
| KRH69136 | Soybean | nucleus | 53.45 | 33.87 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 36.36 | 33.44 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 37.45 | 32.29 |
| KRH33667 | Soybean | nucleus | 53.45 | 32.24 |
| GSMUA_Achr10P... | Banana | nucleus | 34.55 | 31.99 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 34.55 | 31.99 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 28.36 | 31.71 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 35.64 | 31.51 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 35.64 | 31.11 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 34.91 | 30.97 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 31.27 | 30.82 |
| Bra009910.1-P | Field mustard | nucleus | 36.36 | 30.3 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 30.18 | 29.86 |
| KRG96619 | Soybean | plastid, vacuole | 53.45 | 29.7 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 32.0 | 28.57 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 28.0 | 28.21 |
| Bra020526.1-P | Field mustard | nucleus | 43.64 | 27.27 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 28.73 | 27.24 |
| CDY05517 | Canola | plastid | 4.36 | 7.02 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP00040_001 | EnsemblPlants:GSMUA_AchrUn_randomT00040_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG00040_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI00029540C8 | UniProt:M0U516 | MapMan:15.5.2.1 | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00040_001]
Coordinates
chrchrUn_random:+:38176..39197
Molecular Weight (calculated)
31010.3 Da
IEP (calculated)
7.027
GRAVY (calculated)
-0.731
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KVRKGLWSPE EDEKLVKHIT EHGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGTF SEQEESLIIE LHAVLGNRWS QIAARLPGRT
101: DNEIKNSWNS CIKKKLRQRG IDPNSHQPLG DFKMPTPTPE NVNRAVAENS MASTCLSDPM AVFSLAQLSF RPDDSPHCST VIDSSRSSMS KANGVELQSS
201: CSFDGGILPW SELAPDTDAQ LHLEGESEDL KWSEYLQGVF PTPSASQTQT QQFGAWHQNQ NQQQFLLSDI HDKDF
101: DNEIKNSWNS CIKKKLRQRG IDPNSHQPLG DFKMPTPTPE NVNRAVAENS MASTCLSDPM AVFSLAQLSF RPDDSPHCST VIDSSRSSMS KANGVELQSS
201: CSFDGGILPW SELAPDTDAQ LHLEGESEDL KWSEYLQGVF PTPSASQTQT QQFGAWHQNQ NQQQFLLSDI HDKDF
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.