Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P11740_001 | |
| GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 17.78 | 87.67 |
| CDY05331 | Canola | nucleus | 30.56 | 83.33 |
| CDY05516 | Canola | nucleus | 30.28 | 82.58 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 64.72 | 69.76 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 46.67 | 59.36 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 22.5 | 57.04 |
| GSMUA_Achr11P... | Banana | nucleus | 36.11 | 55.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.22 | 55.27 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 50.28 | 52.62 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 43.89 | 51.47 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 49.72 | 49.04 |
| CDY06359 | Canola | nucleus | 41.67 | 48.7 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 50.0 | 48.65 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 46.11 | 48.4 |
| CDY22635 | Canola | nucleus | 41.39 | 48.22 |
| Bra031669.1-P | Field mustard | nucleus | 43.06 | 47.4 |
| CDX93504 | Canola | nucleus | 38.33 | 46.94 |
| AT1G57560.1 | Thale cress | nucleus | 40.83 | 46.82 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 46.39 | 46.39 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 48.33 | 45.67 |
| Zm00001d040527_P001 | Maize | nucleus | 35.56 | 45.55 |
| CDY50901 | Canola | nucleus | 37.22 | 44.82 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 46.39 | 44.53 |
| GSMUA_Achr11P... | Banana | nucleus | 46.11 | 44.27 |
| Bra020016.1-P | Field mustard | nucleus | 40.56 | 43.98 |
| Zm00001d024784_P001 | Maize | nucleus | 30.28 | 42.58 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 36.11 | 42.35 |
| Os05t0140100-01 | Rice | nucleus | 50.0 | 42.15 |
| CDY32188 | Canola | nucleus | 39.17 | 41.96 |
| OQU77376 | Sorghum | nucleus | 49.44 | 41.4 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 49.17 | 41.26 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 49.17 | 41.26 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 49.17 | 41.16 |
| Bra030783.1-P | Field mustard | nucleus | 39.44 | 41.16 |
| Zm00001d010907_P001 | Maize | nucleus | 48.61 | 41.08 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 49.17 | 41.07 |
| CDY31082 | Canola | nucleus | 39.44 | 41.04 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 49.72 | 40.77 |
| AT1G09540.1 | Thale cress | nucleus | 41.39 | 40.71 |
| Os01t0285300-01 | Rice | nucleus | 48.33 | 40.65 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 50.83 | 40.58 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 35.28 | 40.32 |
| EES02806 | Sorghum | nucleus | 47.78 | 40.28 |
| KRH68389 | Soybean | nucleus | 46.39 | 39.95 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 33.89 | 39.87 |
| CDX87038 | Canola | nucleus | 37.22 | 39.65 |
| KRH68350 | Soybean | nucleus | 45.83 | 39.47 |
| KRH33726 | Soybean | nucleus | 46.94 | 39.39 |
| PGSC0003DMT400047076 | Potato | nucleus | 46.39 | 39.2 |
| Bra036317.1-P | Field mustard | nucleus | 36.39 | 38.99 |
| CDY58217 | Canola | nucleus | 36.39 | 38.99 |
| Bra036588.1-P | Field mustard | nucleus | 36.11 | 38.81 |
| CDY68301 | Canola | nucleus | 36.11 | 38.81 |
| Solyc01g102340.2.1 | Tomato | nucleus | 45.83 | 38.73 |
| CDY07124 | Canola | nucleus | 36.11 | 38.69 |
| PGSC0003DMT400040774 | Potato | nucleus | 43.61 | 38.57 |
| KRG96660 | Soybean | nucleus | 46.39 | 38.48 |
| KRH69136 | Soybean | nucleus | 46.11 | 38.25 |
| AT4G01680.2 | Thale cress | nucleus | 36.94 | 38.22 |
| Solyc10g044680.1.1 | Tomato | nucleus | 42.22 | 38.19 |
| KRG90431 | Soybean | nucleus | 45.28 | 38.08 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 31.67 | 37.38 |
| AT5G26660.1 | Thale cress | nucleus | 36.11 | 36.93 |
| KRH33667 | Soybean | nucleus | 46.67 | 36.84 |
| CDX88230 | Canola | nucleus | 36.39 | 36.8 |
| CDX80576 | Canola | nucleus | 36.39 | 36.69 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 30.56 | 35.48 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 29.17 | 35.12 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 31.67 | 34.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.94 | 34.28 |
| GSMUA_Achr10P... | Banana | nucleus | 28.06 | 34.01 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 26.11 | 33.69 |
| KRG96619 | Soybean | plastid, vacuole | 46.11 | 33.54 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 29.17 | 32.92 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 25.28 | 32.62 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 27.78 | 32.15 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 28.06 | 32.06 |
| Bra009910.1-P | Field mustard | nucleus | 29.17 | 31.82 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 25.83 | 31.31 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 24.17 | 31.3 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 21.11 | 30.89 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 23.06 | 30.4 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 24.44 | 28.57 |
| Bra020526.1-P | Field mustard | nucleus | 34.72 | 28.41 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 22.78 | 28.28 |
| CDY05517 | Canola | plastid | 4.17 | 8.77 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr3G12200_001 | EnsemblPlants:GSMUA_Achr3P12200_001 | EnsemblPlants:GSMUA_Achr3T12200_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0SDY7 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000294CEC2 | SEG:seg | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G12200_001]
Coordinates
chr3:+:9048575..9050167
Molecular Weight (calculated)
40417.3 Da
IEP (calculated)
6.421
GRAVY (calculated)
-0.783
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHACCYKQ KLRKGLWSPE EDEKLVRHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGTF SQEEEDLIVD LHAALGNRWS QIAAQLPGRT
101: DNEIKNYWNS CIKKKLRQRG IDPSTHKPLG ETDGREDRET TNSEKTSGSR NPQLLDPASS PNSTRYAPLQ QSNYVACCDA NGTRPIGPPI QPTPPLWFTH
201: DTRLLNADAE LCHEMLPSVV PSISTSMLSS SAELKPMISL PPDSNNSANS TDSSNELELQ SSGTLFDSGI FQWLELLPNK GQIQFDTEPE DLKWSEYLNG
301: TIASTTTNQS QGQSLFGVTK EESQVSVNGL NSWYEEQQLH PPDLYGKDLH QRIPAQPERI
101: DNEIKNYWNS CIKKKLRQRG IDPSTHKPLG ETDGREDRET TNSEKTSGSR NPQLLDPASS PNSTRYAPLQ QSNYVACCDA NGTRPIGPPI QPTPPLWFTH
201: DTRLLNADAE LCHEMLPSVV PSISTSMLSS SAELKPMISL PPDSNNSANS TDSSNELELQ SSGTLFDSGI FQWLELLPNK GQIQFDTEPE DLKWSEYLNG
301: TIASTTTNQS QGQSLFGVTK EESQVSVNGL NSWYEEQQLH PPDLYGKDLH QRIPAQPERI
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.