Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY46357 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | CDY46357 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05331 | Canola | nucleus | 99.24 | 99.24 |
| Zm00001d008206_P001 | Maize | nucleus | 48.48 | 87.67 |
| GSMUA_Achr11P... | Banana | nucleus | 76.52 | 43.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 82.58 | 39.64 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 81.82 | 38.16 |
| CDX93504 | Canola | nucleus | 84.85 | 38.1 |
| CDY68301 | Canola | nucleus | 95.45 | 37.61 |
| CDX87038 | Canola | nucleus | 96.21 | 37.57 |
| CDY50901 | Canola | nucleus | 83.33 | 36.79 |
| AT5G26660.1 | Thale cress | nucleus | 96.21 | 36.08 |
| CDY22635 | Canola | nucleus | 84.09 | 35.92 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 83.33 | 35.83 |
| CDX88230 | Canola | nucleus | 95.45 | 35.39 |
| CDY06359 | Canola | nucleus | 82.58 | 35.39 |
| CDX80576 | Canola | nucleus | 95.45 | 35.29 |
| CDY58217 | Canola | nucleus | 85.61 | 33.63 |
| CDY07124 | Canola | nucleus | 85.61 | 33.63 |
| CDY32188 | Canola | nucleus | 84.85 | 33.33 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 85.61 | 32.85 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 84.85 | 32.65 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 82.58 | 32.63 |
| CDY31082 | Canola | nucleus | 84.85 | 32.37 |
| Zm00001d024784_P001 | Maize | nucleus | 60.61 | 31.25 |
| CDY53970 | Canola | nucleus | 65.91 | 31.07 |
| CDY08409 | Canola | nucleus | 68.94 | 30.95 |
| CDY42171 | Canola | nucleus | 68.94 | 30.95 |
| CDY42172 | Canola | nucleus | 68.94 | 30.95 |
| CDY43404 | Canola | nucleus | 68.94 | 30.95 |
| CDX91158 | Canola | nucleus | 65.15 | 30.94 |
| CDX85684 | Canola | nucleus | 65.15 | 30.82 |
| CDX78493 | Canola | nucleus | 64.39 | 30.36 |
| CDY32589 | Canola | nucleus | 57.58 | 30.28 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 82.58 | 30.28 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 82.58 | 30.28 |
| CDY50197 | Canola | nucleus | 56.82 | 30.0 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 81.82 | 29.59 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 81.82 | 29.19 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 84.09 | 29.13 |
| Bra020526.1-P | Field mustard | nucleus | 96.21 | 28.86 |
| CDX94440 | Canola | nucleus | 56.06 | 28.79 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 81.06 | 28.53 |
| CDY38910 | Canola | nucleus | 57.58 | 28.46 |
| GSMUA_Achr11P... | Banana | nucleus | 80.3 | 28.27 |
| CDX92718 | Canola | nucleus | 55.3 | 27.86 |
| CDX89413 | Canola | nucleus | 56.82 | 27.78 |
| CDY64708 | Canola | nucleus | 53.79 | 27.52 |
| Zm00001d040527_P001 | Maize | nucleus | 58.33 | 27.4 |
| KRH68389 | Soybean | nucleus | 86.36 | 27.27 |
| Zm00001d010907_P001 | Maize | nucleus | 87.12 | 27.0 |
| OQU77376 | Sorghum | nucleus | 87.88 | 26.98 |
| EES02806 | Sorghum | nucleus | 87.12 | 26.93 |
| Os05t0140100-01 | Rice | nucleus | 87.12 | 26.93 |
| Os01t0285300-01 | Rice | nucleus | 87.12 | 26.87 |
| KRG90431 | Soybean | nucleus | 87.12 | 26.87 |
| CDY55231 | Canola | nucleus | 66.67 | 26.83 |
| KRH33726 | Soybean | nucleus | 87.12 | 26.81 |
| CDY05881 | Canola | nucleus | 52.27 | 26.74 |
| CDY27999 | Canola | nucleus | 67.42 | 26.57 |
| KRG96660 | Soybean | nucleus | 87.12 | 26.5 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 85.61 | 26.34 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 85.61 | 26.34 |
| PGSC0003DMT400040774 | Potato | nucleus | 81.06 | 26.29 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 85.61 | 26.28 |
| CDY35982 | Canola | nucleus | 66.67 | 26.27 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 85.61 | 26.22 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 87.12 | 26.2 |
| Solyc10g044680.1.1 | Tomato | nucleus | 78.79 | 26.13 |
| PGSC0003DMT400047076 | Potato | nucleus | 84.09 | 26.06 |
| Solyc01g102340.2.1 | Tomato | nucleus | 84.09 | 26.06 |
| CDY39077 | Canola | nucleus | 70.45 | 26.05 |
| CDY37496 | Canola | nucleus | 70.45 | 26.05 |
| CDX74013 | Canola | nucleus | 65.15 | 25.29 |
| CDX97526 | Canola | nucleus | 64.39 | 25.07 |
| CDY70536 | Canola | nucleus | 64.39 | 24.78 |
| CDX97209 | Canola | nucleus | 65.15 | 24.29 |
| CDY38211 | Canola | nucleus | 65.91 | 23.58 |
| CDY08343 | Canola | nucleus | 65.91 | 23.58 |
| CDY25547 | Canola | nucleus | 65.15 | 23.24 |
| CDY34386 | Canola | extracellular | 20.45 | 9.0 |
| CDY70493 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY05517 | Canola | plastid | 0.0 | 0.0 |
| CDY70602 | Canola | nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY05516 | EnsemblPlantsGene:GSBRNA2T00120457001 | Gene3D:1.10.10.60 | GO:A0A078EWD2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY05516 | ProteinID:CDY05516.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEB6DA | MapMan:15.5.2.1 | : | : |
Description
BnaA02g31750D
Coordinates
chrLK031962:+:633146..633770
Molecular Weight (calculated)
15426.8 Da
IEP (calculated)
10.621
GRAVY (calculated)
-0.774
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRHSCCYKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLKIKG IDPTTHKPLI RS
101: DNEIKNFWNS CLKKKLKIKG IDPTTHKPLI RS
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
Arabidopsis Description
AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.