Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25547 | Canola | nucleus | 83.67 | 67.84 |
| CDY38211 | Canola | nucleus | 79.33 | 64.5 |
| CDY08343 | Canola | nucleus | 78.67 | 63.96 |
| CDY05331 | Canola | nucleus | 9.33 | 21.21 |
| CDY05516 | Canola | nucleus | 9.0 | 20.45 |
| CDY22635 | Canola | nucleus | 13.67 | 13.27 |
| CDY50901 | Canola | nucleus | 13.0 | 13.04 |
| CDY06359 | Canola | nucleus | 13.33 | 12.99 |
| CDX93504 | Canola | nucleus | 12.67 | 12.93 |
| CDX92718 | Canola | nucleus | 11.0 | 12.6 |
| CDY55231 | Canola | nucleus | 13.67 | 12.5 |
| CDY64708 | Canola | nucleus | 10.67 | 12.4 |
| CDY50197 | Canola | nucleus | 10.33 | 12.4 |
| CDX94440 | Canola | nucleus | 10.33 | 12.06 |
| CDY05881 | Canola | nucleus | 10.33 | 12.02 |
| CDY31082 | Canola | nucleus | 13.67 | 11.85 |
| CDX97526 | Canola | nucleus | 13.33 | 11.8 |
| CDX78493 | Canola | nucleus | 11.0 | 11.79 |
| CDY39077 | Canola | nucleus | 14.0 | 11.76 |
| CDY32188 | Canola | nucleus | 13.0 | 11.61 |
| CDY08409 | Canola | nucleus | 11.33 | 11.56 |
| CDY43404 | Canola | nucleus | 11.33 | 11.56 |
| CDY42172 | Canola | nucleus | 11.33 | 11.56 |
| CDY42171 | Canola | nucleus | 11.33 | 11.56 |
| CDY32589 | Canola | nucleus | 9.67 | 11.55 |
| CDY37496 | Canola | nucleus | 13.67 | 11.48 |
| CDX89413 | Canola | nucleus | 10.33 | 11.48 |
| CDX91158 | Canola | nucleus | 10.33 | 11.15 |
| CDX85684 | Canola | nucleus | 10.33 | 11.11 |
| CDY53970 | Canola | nucleus | 10.33 | 11.07 |
| CDX87038 | Canola | nucleus | 12.33 | 10.95 |
| CDY38910 | Canola | nucleus | 9.67 | 10.86 |
| CDY68301 | Canola | nucleus | 12.0 | 10.75 |
| CDY27999 | Canola | nucleus | 12.0 | 10.75 |
| CDY58217 | Canola | nucleus | 12.0 | 10.71 |
| CDX74013 | Canola | nucleus | 12.0 | 10.59 |
| CDY70536 | Canola | nucleus | 12.0 | 10.5 |
| CDY35982 | Canola | nucleus | 11.67 | 10.45 |
| CDY07124 | Canola | nucleus | 11.67 | 10.42 |
| CDX88230 | Canola | nucleus | 12.33 | 10.39 |
| CDX80576 | Canola | nucleus | 12.33 | 10.36 |
| CDX97209 | Canola | nucleus | 11.0 | 9.32 |
| CDY05517 | Canola | plastid | 2.67 | 4.68 |
| CDY70602 | Canola | nucleus, plastid | 2.33 | 4.49 |
| CDY70493 | Canola | cytosol, plastid | 1.67 | 3.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | GO:A0A078H9E8 | UniProt:A0A078H9E8 | EnsemblPlants:CDY34386 | ProteinID:CDY34386 |
| ProteinID:CDY34386.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00056449001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF451 | InterPro:SANT/Myb | SUPFAM:SSF46689 | SignalP:SignalP-noTM | UniParc:UPI0004EE7D89 | SEG:seg |
Description
BnaA09g11280DBnaA09g11280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9E8]
Coordinates
chrLK032333:-:250285..251187
Molecular Weight (calculated)
34067.5 Da
IEP (calculated)
5.247
GRAVY (calculated)
-0.546
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVLNCLMFL SLLLYMFFRW AHIASHLPGR TDNEIKNYWN SWIKKKIRKP HHHYNRHQPS KTTVTLNVEA TSTVTALPST TTTSTIDNLH FDGFMDSPNQ
101: LNFPYDQETN AKIQEALFSH KPHLFMLDTT LPVLEGMFSQ NIITNNNNNN NDYDTQTGGR GSVFEQSFLT HNTEQGDMNL PQQERFQLPT MVSNLFSNST
201: NSNTETVTSY KLPALVGGNL NNISQVDNNN AQDGDIASTF ECLRKQELNY DEWINSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMTLGSS ALSSSFPSSF
101: LNFPYDQETN AKIQEALFSH KPHLFMLDTT LPVLEGMFSQ NIITNNNNNN NDYDTQTGGR GSVFEQSFLT HNTEQGDMNL PQQERFQLPT MVSNLFSNST
201: NSNTETVTSY KLPALVGGNL NNISQVDNNN AQDGDIASTF ECLRKQELNY DEWINSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMTLGSS ALSSSFPSSF
001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF SPEEEKLIIS LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
Arabidopsis Description
AtMYB103MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.