Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001284.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY70536 | Canola | nucleus | 97.35 | 96.5 |
| CDY35982 | Canola | nucleus | 85.29 | 86.57 |
| CDY27999 | Canola | nucleus | 84.41 | 85.67 |
| AT3G08500.1 | Thale cress | nucleus | 82.94 | 82.22 |
| CDY05516 | Canola | nucleus | 25.29 | 65.15 |
| CDY05331 | Canola | nucleus | 25.0 | 64.39 |
| KRH20828 | Soybean | nucleus | 47.35 | 51.77 |
| KRH27485 | Soybean | nucleus | 47.65 | 51.43 |
| KRG93751 | Soybean | nucleus | 47.65 | 48.21 |
| VIT_13s0064g00960.t01 | Wine grape | nucleus | 40.59 | 47.75 |
| KRH18309 | Soybean | nucleus | 46.76 | 46.63 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 38.24 | 46.59 |
| CDX91158 | Canola | nucleus | 35.88 | 43.88 |
| CDX85684 | Canola | nucleus | 35.88 | 43.73 |
| CDY53970 | Canola | nucleus | 35.88 | 43.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.18 | 43.46 |
| CDX78493 | Canola | nucleus | 35.59 | 43.21 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 37.65 | 43.1 |
| Solyc11g065840.1.1 | Tomato | nucleus | 44.12 | 42.49 |
| PGSC0003DMT400018995 | Potato | nucleus | 43.82 | 42.45 |
| CDX97209 | Canola | nucleus | 35.0 | 33.62 |
| CDY50901 | Canola | nucleus | 27.35 | 31.1 |
| CDX93504 | Canola | nucleus | 26.47 | 30.61 |
| CDY22635 | Canola | nucleus | 27.65 | 30.42 |
| CDY32589 | Canola | nucleus | 22.35 | 30.28 |
| CDX94440 | Canola | nucleus | 22.65 | 29.96 |
| CDY06359 | Canola | nucleus | 27.06 | 29.87 |
| CDY50197 | Canola | nucleus | 21.47 | 29.2 |
| CDX92718 | Canola | nucleus | 22.35 | 29.01 |
| CDX89413 | Canola | nucleus | 22.65 | 28.52 |
| CDY68301 | Canola | nucleus | 27.94 | 28.36 |
| CDY42171 | Canola | nucleus | 24.41 | 28.23 |
| CDY42172 | Canola | nucleus | 24.41 | 28.23 |
| CDY43404 | Canola | nucleus | 24.41 | 28.23 |
| CDY08409 | Canola | nucleus | 24.41 | 28.23 |
| CDX87038 | Canola | nucleus | 27.94 | 28.11 |
| CDY38910 | Canola | nucleus | 22.06 | 28.09 |
| CDY32188 | Canola | nucleus | 27.65 | 27.98 |
| CDY31082 | Canola | nucleus | 28.24 | 27.75 |
| CDY64708 | Canola | nucleus | 20.59 | 27.13 |
| CDY05881 | Canola | nucleus | 20.59 | 27.13 |
| CDY58217 | Canola | nucleus | 25.59 | 25.89 |
| CDY07124 | Canola | nucleus | 25.59 | 25.89 |
| CDX88230 | Canola | nucleus | 27.06 | 25.84 |
| CDX80576 | Canola | nucleus | 27.06 | 25.77 |
| CDY55231 | Canola | nucleus | 24.41 | 25.3 |
| CDY39077 | Canola | nucleus | 26.18 | 24.93 |
| CDY08343 | Canola | nucleus | 26.47 | 24.39 |
| CDY38211 | Canola | nucleus | 26.47 | 24.39 |
| CDY37496 | Canola | nucleus | 25.59 | 24.37 |
| CDY25547 | Canola | nucleus | 26.47 | 24.32 |
| CDX97526 | Canola | nucleus | 23.82 | 23.89 |
| CDY34386 | Canola | extracellular | 10.59 | 12.0 |
| CDY05517 | Canola | plastid | 2.65 | 5.26 |
| CDY70493 | Canola | cytosol, plastid | 1.76 | 4.55 |
| CDY70602 | Canola | nucleus, plastid | 2.06 | 4.49 |
Protein Annotations
| EnsemblPlants:CDX74013 | EnsemblPlantsGene:GSBRNA2T00111749001 | Gene3D:1.10.10.60 | GO:A0A078CGD0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF888 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX74013 | ProteinID:CDX74013.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002540542 | MapMan:15.5.2.1 | : |
Description
BnaA03g30340D
Coordinates
chrLK031800:+:916571..917801
Molecular Weight (calculated)
38246.9 Da
IEP (calculated)
6.732
GRAVY (calculated)
-0.692
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMRNQDITT IRDKKKPTHA CGGSNNKPKL RKGLWSPDED ERLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIIHFH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRFKNNNNN TSSGSSPNNS NSNSLDLRDQ HVEMGGKSNS MMGSYHHHHD DMMIMGNTMG MDSSSFHFAP
201: VVSGLGLNQL DPLISVPDHS QYQQMGNTGN VFNANGLGDY GNAILDPISK RASVESEWFL PASENINAIP CTTSNNLNVE VLDPCFNSKT MCHSESFKVG
301: NMFGMENASW ETENPKIGDW DLDGLIDNNS SFPFLDFQVD
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRFKNNNNN TSSGSSPNNS NSNSLDLRDQ HVEMGGKSNS MMGSYHHHHD DMMIMGNTMG MDSSSFHFAP
201: VVSGLGLNQL DPLISVPDHS QYQQMGNTGN VFNANGLGDY GNAILDPISK RASVESEWFL PASENINAIP CTTSNNLNVE VLDPCFNSKT MCHSESFKVG
301: NMFGMENASW ETENPKIGDW DLDGLIDNNS SFPFLDFQVD
001: MMMRKPDITT IRDKGKPNHA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD
Arabidopsis Description
MYB83Transcription factor MYB83 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6U1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.