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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039339.1-P Field mustard nucleus 100.0 100.0
CDY70602 Canola nucleus, plastid 52.38 98.72
CDY42171 Canola nucleus 87.76 87.76
CDY08409 Canola nucleus 87.42 87.42
CDY42172 Canola nucleus 87.42 87.42
AT3G12720.1 Thale cress nucleus 86.39 82.74
CDY70493 Canola cytosol, plastid 35.37 78.79
CDY05516 Canola nucleus 30.95 68.94
CDY05331 Canola nucleus 30.95 68.94
VIT_19s0085g00940.t01 Wine grape nucleus 51.7 45.1
KRH13791 Soybean nucleus 49.66 44.92
KRH43663 Soybean nucleus 49.66 44.65
PGSC0003DMT400018897 Potato nucleus 45.24 41.56
Solyc02g082040.2.1 Tomato nucleus 44.56 40.43
GSMUA_Achr9P25110_001 Banana nucleus 41.84 39.05
GSMUA_Achr9P11190_001 Banana nucleus 42.18 37.92
Solyc10g005240.2.1 Tomato nucleus 43.88 37.39
GSMUA_Achr8P03510_001 Banana nucleus 40.48 37.3
TraesCS2D01G234000.1 Wheat nucleus 46.26 35.6
TraesCS2B01G252000.1 Wheat nucleus 45.92 35.34
TraesCS2A01G230400.1 Wheat nucleus 45.24 35.09
EER97244 Sorghum nucleus 45.24 34.64
HORVU2Hr1G051030.3 Barley nucleus 44.56 34.29
HORVU2Hr1G051010.1 Barley nucleus, plasma membrane 43.54 33.51
CDX93504 Canola nucleus 32.99 32.99
CDY50901 Canola nucleus 32.99 32.44
CDY50197 Canola nucleus 27.21 32.0
Os07t0497500-00 Rice nucleus 43.2 31.75
CDY32589 Canola nucleus 26.53 31.08
CDY22635 Canola nucleus 32.65 31.07
CDY06359 Canola nucleus 32.31 30.84
CDX92718 Canola nucleus 27.21 30.53
CDY37496 Canola nucleus 37.07 30.53
CDX85684 Canola nucleus 28.91 30.47
CDY38910 Canola nucleus 27.55 30.34
CDY39077 Canola nucleus 36.73 30.25
CDY05881 Canola nucleus 26.53 30.23
CDY55231 Canola nucleus 33.67 30.18
Zm00001d021537_P001 Maize nucleus 30.95 30.03
CDX94440 Canola nucleus 26.19 29.96
CDX91158 Canola nucleus 28.23 29.86
CDY53970 Canola nucleus 28.23 29.64
CDX78493 Canola nucleus 28.23 29.64
CDX89413 Canola nucleus 26.87 29.26
CDX97526 Canola nucleus 33.67 29.2
CDY64708 Canola nucleus 25.51 29.07
CDY32188 Canola nucleus 32.99 28.87
CDY07124 Canola nucleus 32.65 28.57
CDY58217 Canola nucleus 32.65 28.57
CDY31082 Canola nucleus 33.33 28.32
CDX87038 Canola nucleus 31.97 27.81
CDX88230 Canola nucleus 33.67 27.81
CDY68301 Canola nucleus 31.63 27.76
CDX80576 Canola nucleus 33.67 27.73
CDY27999 Canola nucleus 29.59 25.97
CDY38211 Canola nucleus 32.31 25.75
CDY08343 Canola nucleus 32.31 25.75
CDY35982 Canola nucleus 29.25 25.67
CDY25547 Canola nucleus 31.63 25.14
CDX74013 Canola nucleus 28.23 24.41
CDY70536 Canola nucleus 27.89 23.91
CDX97209 Canola nucleus 28.57 23.73
CDY34386 Canola extracellular 11.56 11.33
CDY05517 Canola plastid 1.02 1.75
Protein Annotations
EnsemblPlants:CDY43404EnsemblPlantsGene:GSBRNA2T00076482001Gene3D:1.10.10.60GO:A0A078I1B7GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domInterPro:SANT/Myb
PANTHER:PTHR10641PANTHER:PTHR10641:SF702PFAM:PF00249PFscan:PS51294ProteinID:CDY43404ProteinID:CDY43404.1
SMART:SM00717SUPFAM:SSF46689UniParc:UPI000253E855UniProt:A0A078I1B7MapMan:15.5.2.1:
Description
BnaA01g30350DBnaA01g30350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1B7]
Coordinates
chrLK032554:+:254306..255640
Molecular Weight (calculated)
33383.7 Da
IEP (calculated)
8.490
GRAVY (calculated)
-0.610
Length
294 amino acids
Sequence
(BLAST)
001: MRGKWEMKRD EMGHRCCGKH KVNRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGSF TAEEEQTIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSATSSN NNIPKPSKMK SIMTNPTFDL STTAFSITNL NPHTSTKPNK VKSPIRTPLP
201: SQTIIPINNT MSSLLDYENM IPSWSDVDGV APIHEEAPMF SSEKAVVGVD DDYFNMDILF NTPSTTTFDH DFASIFSSAM SIDFNPMDDL GWTF
Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.