CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH01133
KRH18664
KRH40128
KRH44391
KRH47513

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12720.1	KRH44391	AT1G15570.1	21798944
AT3G12720.1	KRH47513	AT1G15570.1	21798944
AT3G12720.1	KRG89812	AT2G41100.1	17360592
AT3G12720.1	KRG94975	AT2G41100.1	17360592
AT3G12720.1	KRH18664	AT2G41100.1	17360592
AT3G12720.1	KRH01133	AT3G28715.1	21798944
AT3G12720.1	KRH40128	AT3G28715.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43663	Soybean	nucleus	88.31	87.77
Bra034738.1-P	Field mustard	nucleus	45.85	50.68
CDY08409	Canola	nucleus	45.85	50.68
CDY42172	Canola	nucleus	45.85	50.68
CDY42171	Canola	nucleus	45.54	50.34
Bra039339.1-P	Field mustard	nucleus	44.92	49.66
CDY43404	Canola	nucleus	44.92	49.66
VIT_19s0085g00940.t01	Wine grape	nucleus	51.38	49.55
AT3G12720.1	Thale cress	nucleus	45.85	48.53
PGSC0003DMT400018897	Potato	nucleus	47.08	47.81
Solyc02g082040.2.1	Tomato	nucleus	46.15	46.3
Solyc10g005240.2.1	Tomato	nucleus	45.23	42.61
GSMUA_Achr9P11190_001	Banana	nucleus	42.46	42.2
GSMUA_Achr8P03510_001	Banana	nucleus	40.0	40.75
GSMUA_Achr9P25110_001	Banana	nucleus	38.77	40.0
TraesCS2A01G230400.1	Wheat	nucleus	41.54	35.62
TraesCS2D01G234000.1	Wheat	nucleus	41.85	35.6
HORVU2Hr1G051030.3	Barley	nucleus	41.85	35.6
TraesCS2B01G252000.1	Wheat	nucleus	41.54	35.34
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	40.92	34.82
EER97244	Sorghum	nucleus	40.31	34.11
Os07t0497500-00	Rice	nucleus	40.62	33.0
KRH10036	Soybean	nucleus	35.38	32.58
KRH47101	Soybean	nucleus	35.08	32.39
KRH44125	Soybean	nucleus	34.46	32.09
KRH35334	Soybean	nucleus	25.85	31.11
KRH63612	Soybean	nucleus	33.85	30.64
KRH59965	Soybean	nucleus	30.15	30.62
KRH27893	Soybean	nucleus	30.46	30.46
KRH38485	Soybean	nucleus	27.08	30.24
KRH09018	Soybean	nucleus	27.08	30.24
KRH41236	Soybean	nucleus	29.85	30.22
KRH77586	Soybean	nucleus	30.15	30.06
KRH54334	Soybean	nucleus	33.54	29.95
Zm00001d021537_P001	Maize	nucleus	27.69	29.7
KRH57123	Soybean	nucleus	33.54	29.46
KRH03235	Soybean	nucleus	31.69	28.45
KRH20828	Soybean	nucleus	26.77	27.97
KRH27485	Soybean	nucleus	25.85	26.67
KRH68350	Soybean	nucleus	34.15	26.55
KRH69136	Soybean	nucleus	35.38	26.5
KRH23131	Soybean	nucleus	26.15	25.68
KRH33667	Soybean	nucleus	36.0	25.66
KRH68389	Soybean	nucleus	32.92	25.6
KRG93751	Soybean	nucleus	26.46	25.6
KRG90431	Soybean	nucleus	33.54	25.47
KRH10204	Soybean	nucleus	26.15	25.45
KRH33726	Soybean	nucleus	33.54	25.41
KRH18309	Soybean	nucleus	26.46	25.22
KRG96660	Soybean	nucleus	33.54	25.12
KRH24713	Soybean	nucleus	25.85	25.0
KRG91494	Soybean	nucleus	25.54	24.92
KRH29717	Soybean	nucleus	25.85	24.71
KRG96619	Soybean	plastid, vacuole	33.85	22.22

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100811532	MapMan:15.5.2.1	EMBL:ACUP02009788	EnsemblPlantsGene:GLYMA_15G264000	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7ME19	EnsemblPlants:KRH13791	ProteinID:KRH13791
ProteinID:KRH13791.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF702
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000233C128	:	:

Description

hypothetical protein

Coordinates

chr15:+:49812996..49814711

Molecular Weight (calculated)

36964.4 Da

IEP (calculated)

6.345

GRAVY (calculated)

-0.564

Length

325 amino acids

Sequence
(BLAST)

001: MGHRCCSKQK IKRGLWSPEE DEKLLRYINT HGQKSWSSVP KFAGLQRCGK SCRLRWINYL RPDLKRGSFT AEEEQIIIDI HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLISQGL DPQTHTLLSS HRRSSVCTIS NIHQNSNSIF IMSSHIPNAP LENTSKTFST LPKPPANIVQ IPSVDVSSEF QTTTSNNGEP
201: RQHLTYELLM ENAITNICSP TYMNPSAVEL FNNDNNVNWV STVNVEDFSA QTLEEGTQVQ VQVQHEKDKT CEDMGIDVRE ANNGNIETSA SFESSNFDFG
301: LLESVLTSEF ISYDFNCMDE LAWNF

Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)

001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF

Arabidopsis Description

ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.