Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13791 | Soybean | nucleus | 87.77 | 88.31 |
| Bra034738.1-P | Field mustard | nucleus | 46.18 | 51.36 |
| CDY08409 | Canola | nucleus | 46.18 | 51.36 |
| CDY42172 | Canola | nucleus | 46.18 | 51.36 |
| VIT_19s0085g00940.t01 | Wine grape | nucleus | 52.6 | 51.04 |
| CDY42171 | Canola | nucleus | 45.87 | 51.02 |
| CDY43404 | Canola | nucleus | 44.65 | 49.66 |
| Bra039339.1-P | Field mustard | nucleus | 44.65 | 49.66 |
| AT3G12720.1 | Thale cress | nucleus | 45.26 | 48.21 |
| PGSC0003DMT400018897 | Potato | nucleus | 46.18 | 47.19 |
| Solyc02g082040.2.1 | Tomato | nucleus | 45.26 | 45.68 |
| Solyc10g005240.2.1 | Tomato | nucleus | 45.57 | 43.19 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 43.12 | 43.12 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 40.67 | 41.69 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 39.14 | 40.63 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 42.51 | 36.68 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 42.2 | 36.13 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 42.2 | 36.13 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 41.9 | 35.86 |
| EER97244 | Sorghum | nucleus | 41.28 | 35.16 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 40.98 | 35.08 |
| Os07t0497500-00 | Rice | nucleus | 40.67 | 33.25 |
| KRH10036 | Soybean | nucleus | 35.47 | 32.86 |
| KRH47101 | Soybean | nucleus | 35.17 | 32.67 |
| KRH44125 | Soybean | nucleus | 34.56 | 32.38 |
| KRH27893 | Soybean | nucleus | 31.5 | 31.69 |
| KRH59965 | Soybean | nucleus | 30.89 | 31.56 |
| KRH35334 | Soybean | nucleus | 25.99 | 31.48 |
| Zm00001d021537_P001 | Maize | nucleus | 29.05 | 31.35 |
| KRH77586 | Soybean | nucleus | 31.19 | 31.29 |
| KRH41236 | Soybean | nucleus | 30.58 | 31.15 |
| KRH09018 | Soybean | nucleus | 27.22 | 30.58 |
| KRH38485 | Soybean | nucleus | 27.22 | 30.58 |
| KRH63612 | Soybean | nucleus | 33.33 | 30.36 |
| KRH54334 | Soybean | nucleus | 32.72 | 29.4 |
| KRH57123 | Soybean | nucleus | 32.72 | 28.92 |
| KRH20828 | Soybean | nucleus | 26.91 | 28.3 |
| KRH03235 | Soybean | nucleus | 30.89 | 27.9 |
| KRH69136 | Soybean | nucleus | 36.39 | 27.42 |
| KRH68350 | Soybean | nucleus | 34.86 | 27.27 |
| KRH27485 | Soybean | nucleus | 25.99 | 26.98 |
| KRH33667 | Soybean | nucleus | 37.0 | 26.54 |
| KRH33726 | Soybean | nucleus | 34.56 | 26.34 |
| KRH68389 | Soybean | nucleus | 33.64 | 26.32 |
| KRG90431 | Soybean | nucleus | 34.25 | 26.17 |
| KRG96660 | Soybean | nucleus | 34.56 | 26.04 |
| KRH23131 | Soybean | nucleus | 25.69 | 25.38 |
| KRG93751 | Soybean | nucleus | 25.99 | 25.3 |
| KRG91494 | Soybean | nucleus | 25.69 | 25.23 |
| KRH18309 | Soybean | nucleus | 26.3 | 25.22 |
| KRH10204 | Soybean | nucleus | 25.69 | 25.15 |
| KRH29717 | Soybean | nucleus | 25.69 | 24.71 |
| KRH24713 | Soybean | nucleus | 25.38 | 24.7 |
| KRG96619 | Soybean | plastid, vacuole | 34.56 | 22.83 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100791209 | MapMan:15.5.2.1 | EMBL:ACUP02004877 | EnsemblPlantsGene:GLYMA_08G163200 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K7L743 | EnsemblPlants:KRH43663 | ProteinID:KRH43663 |
| ProteinID:KRH43663.1 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF702 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002338CDA | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:-:12799264..12801375
Molecular Weight (calculated)
37069.6 Da
IEP (calculated)
6.638
GRAVY (calculated)
-0.551
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHRCCSKQK IKRGLWSPEE DEKLLRYINT HGHKSWSSVP KFAGLQRCGK SCRLRWINYL RPDLKRGSFT AEEEQIIIDI HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLISQGL DPQTHTLLSS HRRSSACTIS NNIHQNSNSI FIMSSHIPNA PFETTCQTFS TLPKPPPNIV QTPSSIVSSE FQTLSTILSD
201: DGEPLQHLPY ELLMENATNI CSPTYMNPSA VELCNDDNNV NWVSRLNVHD FSAQTLEEGA QVLQVQQEKG KTFDDKGSDV REANKGNLET SVSFESSNFD
301: LGFLESVLTS EFISHDLNCM DELAWNF
101: NEVKNFWNSC IKKKLISQGL DPQTHTLLSS HRRSSACTIS NNIHQNSNSI FIMSSHIPNA PFETTCQTFS TLPKPPPNIV QTPSSIVSSE FQTLSTILSD
201: DGEPLQHLPY ELLMENATNI CSPTYMNPSA VELCNDDNNV NWVSRLNVHD FSAQTLEEGA QVLQVQQEKG KTFDDKGSDV REANKGNLET SVSFESSNFD
301: LGFLESVLTS EFISHDLNCM DELAWNF
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.