Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P11190_001 | Banana | nucleus | 70.16 | 67.58 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 67.94 | 67.08 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 22.22 | 49.3 |
| EER97244 | Sorghum | nucleus | 55.24 | 45.31 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 51.75 | 43.01 |
| Os07t0497500-00 | Rice | nucleus | 54.6 | 43.0 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 52.06 | 42.93 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 51.43 | 42.41 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 50.79 | 41.88 |
| CDY43404 | Canola | nucleus | 39.05 | 41.84 |
| CDY42172 | Canola | nucleus | 39.05 | 41.84 |
| CDY42171 | Canola | nucleus | 39.05 | 41.84 |
| CDY08409 | Canola | nucleus | 39.05 | 41.84 |
| Bra039339.1-P | Field mustard | nucleus | 39.05 | 41.84 |
| Bra034738.1-P | Field mustard | nucleus | 39.05 | 41.84 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 50.48 | 41.62 |
| PGSC0003DMT400018897 | Potato | nucleus | 41.9 | 41.25 |
| Solyc02g082040.2.1 | Tomato | nucleus | 41.59 | 40.43 |
| VIT_19s0085g00940.t01 | Wine grape | nucleus | 42.86 | 40.06 |
| AT3G12720.1 | Thale cress | nucleus | 38.73 | 39.74 |
| KRH43663 | Soybean | nucleus | 40.63 | 39.14 |
| Zm00001d021537_P001 | Maize | nucleus | 37.46 | 38.94 |
| KRH13791 | Soybean | nucleus | 40.0 | 38.77 |
| VIT_01s0010g00410.t01 | Wine grape | nucleus | 41.59 | 37.97 |
| GSMUA_Achr11P... | Banana | nucleus | 27.62 | 37.34 |
| Solyc10g005240.2.1 | Tomato | nucleus | 40.63 | 37.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.11 | 35.64 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 32.06 | 33.78 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 28.89 | 32.16 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 30.16 | 30.94 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 23.49 | 30.08 |
| GSMUA_Achr10P... | Banana | nucleus | 28.25 | 29.97 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 28.89 | 29.64 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 29.52 | 29.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.35 | 29.33 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 30.79 | 29.04 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 28.57 | 28.94 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 27.94 | 28.76 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 25.4 | 28.67 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 24.76 | 28.57 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 27.3 | 28.2 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 32.06 | 28.06 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 24.76 | 27.96 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 32.06 | 27.67 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 29.84 | 27.33 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 31.11 | 27.22 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 29.52 | 27.11 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 23.81 | 26.98 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 31.43 | 26.76 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 24.13 | 26.21 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 25.4 | 25.97 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 24.44 | 25.93 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 30.79 | 25.87 |
| GSMUA_Achr11P... | Banana | nucleus | 29.84 | 25.07 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 30.16 | 24.93 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 23.17 | 23.55 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P25110_001 | EnsemblPlants:GSMUA_Achr9T25110_001 | EnsemblPlantsGene:GSMUA_Achr9G25110_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF702 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0002957591 | UniProt:M0U3B8 | MapMan:15.5.2.1 | : | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G25110_001]
Coordinates
chr9:-:29699940..29701134
Molecular Weight (calculated)
35539.7 Da
IEP (calculated)
6.884
GRAVY (calculated)
-0.571
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHHCCSKQK VRRGLWSPEE DEKLIRYITS HGHSCWSTRC GKSCRLRWIN YLRPDLKRGS FSAEDERIVI DVHRILGNKW AQIAKHLPGR TDNEVKNFWN
101: SCIKKKLLAQ GLDPKTHNLI PAAARSNGAN SAEPPRFRYA QSSTCTPFTI SSSIKSFDDM NNSMDLNPPA SFHETAAPVS NFQYQDNHVL MSFKDQNGFS
201: SSSSSLDYTN IASSSFHQPG FIDDCMWDSS VEPLQALRQI EVGHEQGVDQ LQVQPSMCKM FFNEANKKGP VMEISDSNGG GGATFNLEML DNAWLPCVEL
301: SSGSFMDQLQ WDYWV
101: SCIKKKLLAQ GLDPKTHNLI PAAARSNGAN SAEPPRFRYA QSSTCTPFTI SSSIKSFDDM NNSMDLNPPA SFHETAAPVS NFQYQDNHVL MSFKDQNGFS
201: SSSSSLDYTN IASSSFHQPG FIDDCMWDSS VEPLQALRQI EVGHEQGVDQ LQVQPSMCKM FFNEANKKGP VMEISDSNGG GGATFNLEML DNAWLPCVEL
301: SSGSFMDQLQ WDYWV
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.