Factsheet for VIT_01s0010g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0085g00940.t01	Wine grape	nucleus	51.59	52.82
Solyc02g082040.2.1	Tomato	nucleus	43.77	46.6
PGSC0003DMT400018897	Potato	nucleus	42.9	46.25
Solyc10g005240.2.1	Tomato	nucleus	45.51	45.51
GSMUA_Achr9P11190_001	Banana	nucleus	40.58	42.81
GSMUA_Achr8P03510_001	Banana	nucleus	38.84	42.01
GSMUA_Achr9P25110_001	Banana	nucleus	37.97	41.59
TraesCS2A01G230400.1	Wheat	nucleus	42.9	39.05
TraesCS2D01G234000.1	Wheat	nucleus	43.19	39.01
HORVU2Hr1G051030.3	Barley	nucleus	43.19	39.01
TraesCS2B01G252000.1	Wheat	nucleus	42.32	38.22
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	42.32	38.22
VIT_05s0020g01100.t01	Wine grape	nucleus	32.75	38.05
VIT_09s0002g01670.t01	Wine grape	nucleus	33.62	37.54
Os07t0497500-00	Rice	nucleus	43.19	37.25
EER97244	Sorghum	nucleus	41.45	37.24
VIT_02s0025g00320.t01	Wine grape	nucleus	28.41	32.24
Zm00001d021537_P001	Maize	nucleus	28.12	32.01
VIT_17s0000g09080.t01	Wine grape	nucleus	32.75	31.13
VIT_16s0050g00050.t01	Wine grape	nucleus	26.09	30.2
VIT_06s0004g02110.t01	Wine grape	nucleus	27.54	29.23
VIT_13s0064g00960.t01	Wine grape	nucleus	22.61	26.99
VIT_14s0060g00240.t01	Wine grape	nucleus	32.46	25.51
VIT_07s0005g02480.t01	Wine grape	nucleus	33.04	25.28

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100258147	wikigene:100258147	MapMan:15.5.2.1	ProteinID:CBI27388	ProteinID:CBI27388.3
UniProt:D7TA66	EMBL:FN595754	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100258147	wikigene:LOC100258147	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF901	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015C96B2	ArrayExpress:VIT_01s0010g00410
EnsemblPlantsGene:VIT_01s0010g00410	EnsemblPlants:VIT_01s0010g00410.t01	RefSeq:XP_002265578	RefSeq:XP_002265578.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:15079156..15080270

Molecular Weight (calculated)

38865.0 Da

IEP (calculated)

6.873

GRAVY (calculated)

-0.608

Length

345 amino acids

Sequence
(BLAST)

001: MGHHCCSKQK VKRGLWSPEE DEKLIRYITT NGHGCWSSVP KLAGLQRCGK SCRLRWINYL RPDLKRGSFS AQEERTIIDV HRIVGNKWAQ IAKYLPGRTD
101: NEVKNFWNSC IKKKLIAQGL DPNTHHLLLP IDQINNNNNN TNACTLSHIH QQPTALVFSS NTQMIKDAKM DMKSPFLTLP PLPPPPDTSN SIHPPSLHGI
201: SAIPPFEFLN PNYVWMTTVS DQNQHAVMEL VNRSSMGRST PIGPYQINPS GFEVLEENYM RDTIASLEPR KQLEGVQQQQ EEDKVCEGKA DNSKELRNGE
301: NIDNSFDSCS FDLELEYSGL LPCGTGMYCS STSSSCIDQL TWGDC

Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)

001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF

Arabidopsis Description

ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.