Factsheet for VIT_06s0004g02110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023931_P001	Maize	nucleus	22.46	75.26
KRH29717	Soybean	nucleus	58.46	55.88
KRH24713	Soybean	nucleus	57.54	55.65
VIT_13s0064g00960.t01	Wine grape	nucleus	47.69	53.63
KRH10204	Soybean	nucleus	52.62	51.2
KRH23131	Soybean	nucleus	52.0	51.06
TraesCS5A01G101000.1	Wheat	nucleus	52.0	43.44
TraesCS5D01G113300.1	Wheat	nucleus	51.69	43.19
TraesCS5B01G105900.1	Wheat	nucleus	51.08	42.56
EES17106	Sorghum	nucleus	51.69	40.19
HORVU5Hr1G027750.1	Barley	nucleus	49.85	34.91
VIT_05s0020g01100.t01	Wine grape	nucleus	29.54	32.32
VIT_09s0002g01670.t01	Wine grape	nucleus	29.23	30.74
VIT_02s0025g00320.t01	Wine grape	nucleus	26.77	28.62
VIT_16s0050g00050.t01	Wine grape	nucleus	26.15	28.52
VIT_19s0085g00940.t01	Wine grape	nucleus	28.62	27.6
VIT_01s0010g00410.t01	Wine grape	nucleus	29.23	27.54
VIT_17s0000g09080.t01	Wine grape	nucleus	29.85	26.72
VIT_07s0005g02480.t01	Wine grape	nucleus	33.54	24.17
VIT_14s0060g00240.t01	Wine grape	nucleus	31.69	23.46

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100243210	wikigene:100243210	MapMan:15.5.2.1	ProteinID:CBI16378	ProteinID:CBI16378.3
UniProt:D7SL50	EMBL:FN594951	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100243210	wikigene:LOC100243210	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF593	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015C754A	ArrayExpress:VIT_06s0004g02110
EnsemblPlantsGene:VIT_06s0004g02110	EnsemblPlants:VIT_06s0004g02110.t01	RefSeq:XP_002282821	RefSeq:XP_002282821.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:2573382..2575343

Molecular Weight (calculated)

35852.4 Da

IEP (calculated)

5.060

GRAVY (calculated)

-0.533

Length

325 amino acids

Sequence
(BLAST)

001: MRKPEKSTAN GACSNTTSTG SKLRKGLWSP EEDDKLMNYM LNNGQGCWSD VARNAGLQRC GKSCRLRWIN YLRPDLKRGA FSPQEEELII HLHSLLGNRW
101: SQIAARLPGR TDNEIKNFWN STIKKRLKNS SSVPSPNASD SSSDQPRDVM GGLMSMREQG LMAMYMDSSS SPPSIQAMAA LNQMIEPLPM LEPSVDMTSV
201: NSGCFNAPPC MTQVGILSAE GLYGDHVGLL GGGGGCVVGE QFFPPVESIS MGENGNKTLE NTFDRNPNNN PYNNVIINNN SSNKVENMVG VGNFWEGEDL
301: RIGEWNLEDL MRDVSSFPFL DFHVE

Best Arabidopsis Sequence Match ( AT3G08500.1 )
(BLAST)

001: MMMRKPDITT IRDKGKPNHA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD

Arabidopsis Description

MYB83Transcription factor MYB83 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.