Factsheet for VIT_02s0025g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77586	Soybean	nucleus	76.32	71.17
KRH27893	Soybean	nucleus	75.66	70.77
KRH41236	Soybean	nucleus	73.68	69.78
KRH59965	Soybean	nucleus	72.7	69.06
Solyc08g081500.1.1	Tomato	nucleus	64.8	59.52
GSMUA_Achr10P...	Banana	nucleus	57.57	58.92
GSMUA_Achr6P36930_001	Banana	nucleus	53.62	52.41
AT1G63910.1	Thale cress	nucleus	60.86	50.0
CDY38211	Canola	nucleus	59.54	49.05
Bra027668.1-P	Field mustard	nucleus	59.21	48.78
CDY08343	Canola	nucleus	59.21	48.78
CDY25547	Canola	nucleus	59.21	48.65
EES13346	Sorghum	nucleus	50.99	43.91
TraesCS7D01G300000.1	Wheat	nucleus	49.34	43.73
HORVU7Hr1G072450.2	Barley	nucleus	49.01	43.7
TraesCS7B01G204800.1	Wheat	nucleus	49.34	43.48
TraesCS7A01G304500.1	Wheat	nucleus	49.01	43.44
Os08t0151300-01	Rice	nucleus	49.67	42.06
Zm00001d024630_P002	Maize	nucleus	49.67	41.71
VIT_05s0020g01100.t01	Wine grape	nucleus	36.84	37.71
VIT_09s0002g01670.t01	Wine grape	nucleus	33.55	33.01
VIT_19s0085g00940.t01	Wine grape	nucleus	32.89	29.67
VIT_16s0050g00050.t01	Wine grape	nucleus	28.95	29.53
VIT_01s0010g00410.t01	Wine grape	nucleus	32.24	28.41
VIT_17s0000g09080.t01	Wine grape	nucleus	32.57	27.27
VIT_06s0004g02110.t01	Wine grape	nucleus	28.62	26.77
VIT_13s0064g00960.t01	Wine grape	nucleus	22.7	23.88
VIT_07s0005g02480.t01	Wine grape	nucleus	35.2	23.73
VIT_14s0060g00240.t01	Wine grape	nucleus	34.21	23.69

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100244939	wikigene:100244939	MapMan:15.5.2.1	ProteinID:CBI34384	ProteinID:CBI34384.3
UniProt:D7TV59	EMBL:FN596251	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100244939	wikigene:LOC100244939	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF451	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CD268	ArrayExpress:VIT_02s0025g00320
EnsemblPlantsGene:VIT_02s0025g00320	EnsemblPlants:VIT_02s0025g00320.t01	RefSeq:XP_002273004	RefSeq:XP_002273004.1	:	:

Description

No Description!

Coordinates

chr2:-:433942..435565

Molecular Weight (calculated)

34320.5 Da

IEP (calculated)

4.952

GRAVY (calculated)

-0.529

Length

304 amino acids

Sequence
(BLAST)

001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT TYGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF TPEEEKLIIN LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPS APLASSITNT EHSQLGYGSS QLDMVNQDLM MKQPAQETLF SSPAPLFMFD TGSLDLIGDG NGRTELFQEV AGLSSETWQL
201: NQHQVEALPP PASYSVGMDT NYLPPLVENI ENMVPMQVQS CSIDEEGEIA LECLQRQELN DWVESQQCPS FLFWDQVEGH LGGEEIAPPS SNMGAVLSSY
301: STSL

Best Arabidopsis Sequence Match ( AT1G63910.1 )
(BLAST)

001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF SPEEEKLIIS LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF

Arabidopsis Description

AtMYB103MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SRB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.