Factsheet for Solyc08g081500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00320.t01	Wine grape	nucleus	59.52	64.8
KRH77586	Soybean	nucleus	58.91	59.82
KRH27893	Soybean	nucleus	57.4	58.46
KRH41236	Soybean	nucleus	56.5	58.26
KRH59965	Soybean	nucleus	55.29	57.19
Solyc01g009650.1.1	Tomato	nucleus	15.11	54.95
GSMUA_Achr10P...	Banana	nucleus	48.64	54.21
GSMUA_Achr6P36930_001	Banana	nucleus	46.22	49.2
AT1G63910.1	Thale cress	nucleus	49.85	44.59
CDY38211	Canola	nucleus	49.55	44.44
CDY08343	Canola	nucleus	49.24	44.17
Bra027668.1-P	Field mustard	nucleus	48.94	43.9
CDY25547	Canola	nucleus	48.64	43.51
HORVU7Hr1G072450.2	Barley	nucleus	44.11	42.82
TraesCS7B01G204800.1	Wheat	nucleus	44.11	42.32
TraesCS7D01G300000.1	Wheat	nucleus	43.81	42.27
TraesCS7A01G304500.1	Wheat	nucleus	43.81	42.27
EES13346	Sorghum	nucleus	44.71	41.93
Os08t0151300-01	Rice	nucleus	42.6	39.28
Zm00001d024630_P002	Maize	nucleus	42.9	39.23
Solyc03g112390.2.1	Tomato	nucleus	29.61	30.15
Solyc02g082040.2.1	Tomato	nucleus	29.0	29.63
Solyc06g071690.2.1	Tomato	nucleus	27.79	28.66
Solyc03g121740.1.1	Tomato	nucleus	31.42	28.49
Solyc10g005240.2.1	Tomato	nucleus	29.61	28.41
Solyc03g025870.2.1	Tomato	nucleus	23.57	27.96
Solyc11g065840.1.1	Tomato	nucleus	29.0	27.2
Solyc01g087130.2.1	Tomato	nucleus	27.79	26.14
Solyc10g044680.1.1	Tomato	nucleus	30.51	25.38
Solyc01g102340.2.1	Tomato	nucleus	32.33	25.12

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019748	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893
GO:GO:1901430	GO:GO:2000652	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF451	UniProt:Q43524	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g081500.1	EnsemblPlants:Solyc08g081500.1.1	UniParc:UPI00000A2C17	EMBL:X95297	SEG:seg

Description

Transcription factor [Source:UniProtKB/TrEMBL;Acc:Q43524]

Coordinates

chr8:-:64536255..64539091

Molecular Weight (calculated)

37827.9 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.772

Length

331 amino acids

Sequence
(BLAST)

001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT SHGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF TPEEEKLIIS LHGAVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKLKKTS KSSTNTTSIT DHHHHQHQNQ RPQLTNYNTI TSQQDIFFTQ DIGTKSQVLL QDSTLFNSPN QLFFFDGGSL DSMTNVLIND
201: ATNRNATNNT SLFQETSILN SEFCWQVDQQ QVQTSSYAIG MNSNYLPPLI ESMVPPMEIP SSNNNNNIIL EGQENNNELN EWNSQVDTQQ CCPSYLFWDQ
301: ENGSIGGDHE IIDPTTSNNM GQILSSFPST L

Best Arabidopsis Sequence Match ( AT3G13890.2 )
(BLAST)

001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT
201: TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS
301: SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI SCGQYVIT

Arabidopsis Description

MYB26Transcription factor MYB26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPG3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.