Factsheet for Solyc03g112390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046645	Potato	nucleus	95.08	95.08
Solyc01g009650.1.1	Tomato	nucleus	16.62	59.34
Solyc06g071690.2.1	Tomato	nucleus	58.46	59.19
VIT_17s0000g09080.t01	Wine grape	nucleus	59.69	53.44
KRH57123	Soybean	nucleus	54.77	48.11
KRH63612	Soybean	nucleus	52.92	47.91
KRH54334	Soybean	nucleus	52.92	47.25
KRH03235	Soybean	nucleus	51.69	46.41
TraesCS3B01G286500.1	Wheat	nucleus	36.31	41.99
Zm00001d009435_P001	Maize	nucleus	32.62	41.9
GSMUA_Achr3P28540_001	Banana	nucleus	39.38	41.69
TraesCS3D01G255400.1	Wheat	nucleus	36.31	41.4
Os01t0702700-01	Rice	nucleus	37.23	40.2
TraesCS1A01G366100.1	Wheat	nucleus	36.0	40.07
GSMUA_Achr9P22190_001	Banana	nucleus	38.77	40.0
GSMUA_Achr4P06410_001	Banana	nucleus	37.23	39.54
TraesCS1D01G371900.1	Wheat	nucleus	34.15	39.5
TraesCS1D01G371800.1	Wheat	nucleus	35.08	39.31
TraesCS1B01G383700.1	Wheat	nucleus	35.38	39.25
TraesCS1D01G371700.1	Wheat	nucleus	35.38	39.25
TraesCS1A01G365900.1	Wheat	nucleus	35.38	38.72
TraesCS1B01G383800.1	Wheat	nucleus	34.15	38.54
TraesCS1A01G366200.1	Wheat	nucleus	34.77	38.18
TraesCS1A01G366300.1	Wheat	nucleus	33.85	38.06
EES03490	Sorghum	nucleus	36.62	37.9
EES18602	Sorghum	nucleus	37.54	37.89
Os05t0543600-01	Rice	nucleus	36.31	37.82
TraesCS3A01G200300.1	Wheat	nucleus	35.08	37.75
TraesCS1B01G383600.1	Wheat	nucleus	35.38	37.7
TraesCS1D01G371500.1	Wheat	nucleus	34.46	37.58
TraesCS1B01G383900.1	Wheat	nucleus	33.23	37.37
TraesCS3A01G254500.1	Wheat	nucleus	36.31	37.34
TraesCS1D01G371400.1	Wheat	nucleus	34.46	36.96
Zm00001d038878_P001	Maize	nucleus	36.62	36.96
TraesCS1A01G366000.1	Wheat	nucleus	31.69	36.79
GSMUA_Achr4P13280_001	Banana	nucleus	34.15	36.39
HORVU3Hr1G047290.2	Barley	nucleus	33.85	36.3
TraesCS3B01G224500.1	Wheat	nucleus	34.46	36.13
EES03100	Sorghum	nucleus	36.31	34.6
GSMUA_AchrUn_...	Banana	plasma membrane	32.31	33.87
Zm00001d043729_P001	Maize	nucleus	23.69	33.62
Zm00001d011669_P001	Maize	nucleus	24.31	32.92
EES02393	Sorghum	nucleus	28.0	32.5
EES07893	Sorghum	nucleus	24.62	31.62
Solyc01g102340.2.1	Tomato	nucleus	41.23	31.46
Solyc02g082040.2.1	Tomato	nucleus	30.77	30.86
HORVU1Hr1G079040.4	Barley	nucleus, plastid	33.23	30.68
OQU86237	Sorghum	nucleus	25.23	30.48
Solyc03g121740.1.1	Tomato	nucleus	33.54	29.86
Solyc10g005240.2.1	Tomato	nucleus	31.69	29.86
Solyc10g044680.1.1	Tomato	nucleus	36.31	29.65
Solyc08g081500.1.1	Tomato	nucleus	30.15	29.61
Zm00001d005055_P001	Maize	nucleus	20.62	29.52
Solyc03g025870.2.1	Tomato	nucleus	25.23	29.39
Zm00001d039700_P001	Maize	nucleus	21.54	29.29
Zm00001d008695_P001	Maize	nucleus	24.62	28.88
TraesCS3A01G094300.1	Wheat	nucleus	23.69	27.7
TraesCS3B01G109800.1	Wheat	nucleus	24.0	27.46
TraesCS3D01G094500.1	Wheat	nucleus	24.0	27.37
HORVU3Hr1G016940.1	Barley	nucleus	24.0	27.27
Solyc11g065840.1.1	Tomato	nucleus	28.92	26.63
Solyc01g087130.2.1	Tomato	nucleus	28.31	26.14
HORVU1Hr1G079030.2	Barley	nucleus	24.92	17.09

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BK93	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF466
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc03g112390.2	EnsemblPlants:Solyc03g112390.2.1	UniParc:UPI00027674BF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:62793585..62795294

Molecular Weight (calculated)

37142.3 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.871

Length

325 amino acids

Sequence
(BLAST)

001: MGRHSCSVKQ KLRKGLWSPE EDEKLSNYIT NFGIGSWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGMF SQDEEDKIIS LHQVLGNRWA QIAAQLPGRT
101: DNEIKNFWNS SLKKKLMKQG IDPNTHKPLK ENQIIKDEEN CTNKTSMLQI PPHLNEMGNG QFTDSKQVFD LLFVHDFQSN TNPREYNSQV LAQYHDHQGE
201: FENHQNYVFC SGSSVTKLEH VQMTETDFGS SSTSRMSSSN SSNMCSNQNT AGIQINGMSE NSEALSWDIE NKMESLFQYP YIGIKNEESK SSPSQERDQL
301: YGNTTSGDFM SNYPLSSLTE EFKWG

Best Arabidopsis Sequence Match ( AT5G26660.1 )
(BLAST)

001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL

Arabidopsis Description

MYB86Transcription factor MYB86 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPH6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.