CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G224500.1	Wheat	nucleus	66.28	72.9
HORVU3Hr1G047290.2	Barley	nucleus	64.52	72.61
TraesCS3A01G200300.1	Wheat	nucleus	64.22	72.52
EES18602	Sorghum	nucleus	40.18	42.55
GSMUA_Achr3P28540_001	Banana	nucleus	37.83	42.02
EES03490	Sorghum	nucleus	38.42	41.72
GSMUA_Achr4P06410_001	Banana	nucleus	36.66	40.85
GSMUA_Achr9P22190_001	Banana	nucleus	36.66	39.68
EES02393	Sorghum	nucleus	32.55	39.64
GSMUA_Achr4P13280_001	Banana	nucleus	34.31	38.36
PGSC0003DMT400069644	Potato	nucleus	35.19	38.1
Solyc06g071690.2.1	Tomato	nucleus	35.78	38.01
EER92216	Sorghum	nucleus	36.66	37.88
EES07893	Sorghum	nucleus	26.98	36.36
PGSC0003DMT400046645	Potato	nucleus	34.6	36.31
Solyc03g112390.2.1	Tomato	nucleus	34.6	36.31
KRH63612	Soybean	nucleus	37.24	35.38
OQU86237	Sorghum	nucleus	27.27	34.57
KRH54334	Soybean	nucleus	36.66	34.34
VIT_17s0000g09080.t01	Wine grape	nucleus	36.36	34.16
KRH57123	Soybean	nucleus	36.95	34.05
KRH03235	Soybean	nucleus	34.9	32.87
EER97608	Sorghum	nucleus	36.07	32.28
EES03504	Sorghum	nucleus	28.74	30.72
EES11177	Sorghum	nucleus	26.69	30.54
OQU77376	Sorghum	nucleus	37.24	29.53
EES02806	Sorghum	nucleus	36.07	28.81
EES06150	Sorghum	nucleus	24.93	28.43
EES07547	Sorghum	nucleus	25.22	28.2
EES13346	Sorghum	nucleus	29.03	28.05
EER97244	Sorghum	nucleus	28.74	25.52
EES17106	Sorghum	nucleus	29.03	23.68

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8074989	UniProt:C5XMX8	EnsemblPlants:EES03100	ProteinID:EES03100
ProteinID:EES03100.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF661	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3003G183800	SUPFAM:SSF46689	UniParc:UPI0001A84CE5	RefSeq:XP_002457980.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:48914545..48917277

Molecular Weight (calculated)

37318.1 Da

IEP (calculated)

6.079

GRAVY (calculated)

-0.616

Length

341 amino acids

Sequence
(BLAST)

001: MGREAAATRP KLRRGLWSPE EDEKLYNHII RYGVGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGSF SQQEEDLIIS LHKILGNRWS QIASQLPGRT
101: DNEIKNFWNS CIKKKLRQRG IDPATHKPLN DDDDVVVAAD DNTVAPHRHQ DDKKLASSTD DQCFAAMGAA AASSDDPLAP HSPTVSFDPL SVTNVPTMQQ
201: GSYGAAHSFG RSDNHLCDYG GVDVVSDAAT TYSAYTGGGD SSSNSNGTWT CGGNNVVGGD PMPPHMDMFG RDAEAVYQQF DPAKYSPWQH QQQHPAAARF
301: DGHNVSSGGA AAGFLIRRDL PDSCFDLARS ALEDEFSVDF L

Best Arabidopsis Sequence Match ( AT1G57560.1 )
(BLAST)

001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL

Arabidopsis Description

AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.