CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G066860.11	Barley	nucleus	71.47	77.55
TraesCS3D01G251600.1	Wheat	nucleus	69.59	75.77
TraesCS3A01G251200.1	Wheat	nucleus	69.59	75.77
Os01t0709000-01	Rice	nucleus	72.41	75.24
TraesCS3B01G280700.1	Wheat	nucleus	65.83	73.43
PGSC0003DMT400087467	Potato	nucleus	33.54	38.91
GSMUA_Achr6P35800_001	Banana	nucleus	35.11	37.46
VIT_09s0002g01670.t01	Wine grape	nucleus	34.8	35.92
KRH44125	Soybean	nucleus	36.36	33.24
KRH10036	Soybean	nucleus	36.05	32.58
EES03490	Sorghum	nucleus	31.97	32.48
KRH47101	Soybean	nucleus	35.74	32.39
EES18602	Sorghum	nucleus	32.29	31.99
CDY55231	Canola	nucleus	32.29	31.4
EES02393	Sorghum	nucleus	27.27	31.07
Bra021515.1-P	Field mustard	nucleus	33.86	30.34
CDY37496	Canola	nucleus	33.86	30.25
CDY39077	Canola	nucleus	33.86	30.25
Solyc03g121740.1.1	Tomato	nucleus	34.48	30.14
EES07893	Sorghum	nucleus	23.82	30.04
CDX97526	Canola	nucleus	31.66	29.79
EER92216	Sorghum	nucleus	30.72	29.7
AT3G13890.1	Thale cress	nucleus	33.86	29.43
Bra027389.1-P	Field mustard	nucleus	31.66	29.02
EES03100	Sorghum	nucleus	30.72	28.74
OQU77376	Sorghum	nucleus	38.56	28.6
EES06150	Sorghum	nucleus	26.65	28.43
EER97244	Sorghum	nucleus	34.17	28.39
EES02806	Sorghum	nucleus	37.93	28.34
EES11177	Sorghum	nucleus	26.33	28.19
EES13346	Sorghum	nucleus	31.03	28.05
EES07547	Sorghum	nucleus	26.02	27.21
EER97608	Sorghum	nucleus	31.97	26.77
OQU86237	Sorghum	nucleus	22.57	26.77
EES17106	Sorghum	nucleus	28.53	21.77

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:C5XI73	EnsemblPlants:EES03504	ProteinID:EES03504	ProteinID:EES03504.1
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF656	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3003G274000
SUPFAM:SSF46689	unigene:Sbi.11661	UniParc:UPI0001A84C16	RefSeq:XP_002458384.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:61016088..61018538

Molecular Weight (calculated)

33944.2 Da

IEP (calculated)

7.269

GRAVY (calculated)

-0.292

Length

319 amino acids

Sequence
(BLAST)

001: MGHHSCCNKQ KVRRGLWSPE EDEKLIKYIT THGHGCWSSV PRQAGLQRCG KSCRLRWINY LRPDLKRGSF SQQEEALIVE LHRVLGNRWA QIAKHLPGRT
101: DNEVKNFWNS TIKKKLISQA VGSLHPAADL YYNILDGAAV QGLAAAGCAP LNGAADSASA QAAVGVTQSP PPMLHNNPAA WSDFGSQPLF LPGHGGIHGG
201: GGDLQYAAVD GEFVKQCRAA DSYPPPEDGG GYASQCKPPP AADVVPQQEG AMARSLIPAV FLEPNKCAAG DFMPEPAMAP VMDFMEAILA GSSSTSAASA
301: SSLDSFSANA GMQSHCWIP

Best Arabidopsis Sequence Match ( AT3G13890.2 )
(BLAST)

001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT
201: TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS
301: SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI SCGQYVIT

Arabidopsis Description

MYB26Transcription factor MYB26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPG3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.