Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G251600.1 | Wheat | nucleus | 96.85 | 94.54 |
| TraesCS3A01G251200.1 | Wheat | nucleus | 95.1 | 92.83 |
| HORVU3Hr1G066860.11 | Barley | nucleus | 90.21 | 87.76 |
| Os01t0709000-01 | Rice | nucleus | 77.27 | 71.99 |
| EES03504 | Sorghum | nucleus | 73.43 | 65.83 |
| TraesCS2B01G178000.1 | Wheat | nucleus | 23.78 | 34.87 |
| PGSC0003DMT400087467 | Potato | nucleus | 32.87 | 34.18 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 34.27 | 32.78 |
| TraesCS3B01G286500.1 | Wheat | nucleus | 31.47 | 32.03 |
| TraesCS1B01G383800.1 | Wheat | nucleus | 32.17 | 31.94 |
| TraesCS1B01G383700.1 | Wheat | nucleus | 32.52 | 31.74 |
| VIT_09s0002g01670.t01 | Wine grape | nucleus | 34.27 | 31.72 |
| TraesCS1B01G383900.1 | Wheat | nucleus | 31.82 | 31.49 |
| TraesCS1B01G383600.1 | Wheat | nucleus | 32.87 | 30.82 |
| TraesCS7B01G244200.1 | Wheat | nucleus | 30.42 | 30.0 |
| KRH44125 | Soybean | nucleus | 35.66 | 29.23 |
| TraesCS3B01G224500.1 | Wheat | nucleus | 31.47 | 29.03 |
| KRH47101 | Soybean | nucleus | 35.66 | 28.98 |
| CDY55231 | Canola | nucleus | 33.22 | 28.96 |
| KRH10036 | Soybean | nucleus | 34.27 | 27.76 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 26.57 | 27.74 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 26.57 | 27.74 |
| TraesCS4B01G312100.1 | Wheat | nucleus | 25.17 | 27.59 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 26.57 | 27.24 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 26.92 | 27.21 |
| Bra021515.1-P | Field mustard | nucleus | 33.57 | 26.97 |
| TraesCS7B01G204800.1 | Wheat | nucleus | 32.52 | 26.96 |
| CDY37496 | Canola | nucleus | 33.57 | 26.89 |
| CDY39077 | Canola | nucleus | 33.57 | 26.89 |
| CDX97526 | Canola | nucleus | 31.47 | 26.55 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 39.86 | 26.45 |
| AT3G13890.1 | Thale cress | nucleus | 33.92 | 26.43 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 26.92 | 26.1 |
| Solyc03g121740.1.1 | Tomato | nucleus | 33.22 | 26.03 |
| Bra027389.1-P | Field mustard | nucleus | 31.47 | 25.86 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 33.92 | 25.39 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 26.57 | 24.68 |
| TraesCS2B01G177900.1 | Wheat | nucleus | 30.07 | 23.82 |
| TraesCS3B01G109800.1 | Wheat | nucleus | 22.73 | 22.89 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 27.27 | 20.0 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G280700.1 | EnsemblPlantsGene:TraesCS3B01G280700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF656 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:451360429..451361866
Molecular Weight (calculated)
30653.1 Da
IEP (calculated)
6.590
GRAVY (calculated)
-0.228
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHHSCCNKQ KVRRGLWSPE EDEKLVKYIT AHGHGCWSSV PRAAEVRQEL RWINYLRPDL KRGSFSQEEE ALIVDLHRVL GNRWAQIAKH LPGRTDNEVK
101: NFWNSTIKKK LISQAVGSLH SGNIPSSADL YYNILDGAGQ GIAAAGCASL NGLDNAAQAV ATQPPPSSAA WLNFTSQPLL LPVHVPGCDL QYTVDGEFIR
201: LCREAANACP ENGASSLLAQ EGAADRSCLP VFAEPKGASA FATDPGMGPV ADFMDAILGS SSTSAASVSS VDSFSANTGM QLHWVP
101: NFWNSTIKKK LISQAVGSLH SGNIPSSADL YYNILDGAGQ GIAAAGCASL NGLDNAAQAV ATQPPPSSAA WLNFTSQPLL LPVHVPGCDL QYTVDGEFIR
201: LCREAANACP ENGASSLLAQ EGAADRSCLP VFAEPKGASA FATDPGMGPV ADFMDAILGS SSTSAASVSS VDSFSANTGM QLHWVP
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.