Factsheet for PGSC0003DMT400087467

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121740.1.1	Tomato	nucleus	94.55	71.23
VIT_09s0002g01670.t01	Wine grape	nucleus	49.82	44.34
KRH44125	Soybean	nucleus	50.55	39.83
GSMUA_Achr6P35800_001	Banana	nucleus	43.27	39.8
KRH10036	Soybean	nucleus	50.91	39.66
KRH47101	Soybean	nucleus	50.55	39.49
CDY55231	Canola	nucleus	45.45	38.11
CDY37496	Canola	nucleus	49.09	37.82
Bra021515.1-P	Field mustard	nucleus	48.73	37.64
CDY39077	Canola	nucleus	48.73	37.53
CDX97526	Canola	nucleus	45.82	37.17
Bra027389.1-P	Field mustard	nucleus	45.82	36.21
HORVU3Hr1G066860.11	Barley	nucleus	38.18	35.71
AT3G13890.1	Thale cress	nucleus	47.64	35.69
TraesCS3D01G251600.1	Wheat	nucleus	37.82	35.49
TraesCS3A01G251200.1	Wheat	nucleus	37.82	35.49
Os01t0709000-01	Rice	nucleus	38.91	34.85
PGSC0003DMT400018897	Potato	nucleus	39.64	34.06
EES03504	Sorghum	nucleus	38.91	33.54
TraesCS3B01G280700.1	Wheat	nucleus	34.18	32.87
PGSC0003DMT400046645	Potato	nucleus	38.18	32.31
PGSC0003DMT400069644	Potato	nucleus	36.73	32.06
PGSC0003DMT400037080	Potato	nucleus	28.0	27.7
PGSC0003DMT400018995	Potato	nucleus	33.45	26.21
PGSC0003DMT400040774	Potato	nucleus	37.82	25.55
PGSC0003DMT400047076	Potato	nucleus	39.27	25.35
PGSC0003DMT400017709	Potato	nucleus	32.36	25.07

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0009719
GO:GO:0009739	GO:GO:0009834	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1DDW8
InterPro:Myb_dom	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400037038	PGSC:PGSC0003DMG400037038	EnsemblPlants:PGSC0003DMT400087467	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF656	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000296CC8C
SEG:seg	:	:	:	:	:

Description

MYB9 [Source:PGSC_GENE;Acc:PGSC0003DMG400037038]

Coordinates

chr3:-:61012748..61014172

Molecular Weight (calculated)

31427.4 Da

IEP (calculated)

8.154

GRAVY (calculated)

-0.467

Length

275 amino acids

Sequence
(BLAST)

001: MGHHTCCNKQ KVKRGLWSPE EDEKLINYIT NYGHACWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHGILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLHLSH GILPDLSIIF PNYNNLMTNP NPNPSFDNFY SFNPNVPITN SFMSSINSPL ILDQMNNINH NGDLNLTNQV MPNSLPNLSF
201: DSISNDPTWF NFNYPNHLQH DLEYNPSVIK QDNSINSMLT SNISLNCTNG ENFMDSTNAA IKIHQDLMMV RILFI

Best Arabidopsis Sequence Match ( AT3G13890.2 )
(BLAST)

001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT
201: TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS
301: SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI SCGQYVIT

Arabidopsis Description

MYB26Transcription factor MYB26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPG3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.