Factsheet for PGSC0003DMT400018995

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065840.1.1	Tomato	nucleus	96.58	96.03
Zm00001d023931_P001	Maize	nucleus	21.08	76.29
GSMUA_Achr8P31350_001	Banana	nucleus	45.87	57.71
GSMUA_AchrUn_...	Banana	nucleus	44.16	54.77
GSMUA_Achr2P07780_001	Banana	nucleus	45.87	54.21
KRH20828	Soybean	nucleus	45.01	50.8
KRH27485	Soybean	nucleus	45.3	50.48
KRG93751	Soybean	nucleus	48.15	50.3
KRH18309	Soybean	nucleus	46.15	47.51
AT3G08500.1	Thale cress	nucleus	45.3	46.36
Bra029696.1-P	Field mustard	nucleus	43.87	46.25
PGSC0003DMT400017709	Potato	nucleus	46.72	46.2
CDY35982	Canola	nucleus	43.87	45.97
TraesCS5D01G113300.1	Wheat	nucleus	50.71	45.76
TraesCS5A01G101000.1	Wheat	nucleus	50.71	45.76
TraesCS5B01G105900.1	Wheat	nucleus	50.71	45.64
CDY27999	Canola	nucleus	43.3	45.37
CDX74013	Canola	nucleus	42.45	43.82
Bra001284.1-P	Field mustard	nucleus	42.45	43.82
CDY70536	Canola	nucleus	42.73	43.73
EES17106	Sorghum	nucleus	46.44	39.0
HORVU5Hr1G027750.1	Barley	nucleus	50.43	38.15
PGSC0003DMT400087467	Potato	nucleus	26.21	33.45
PGSC0003DMT400046645	Potato	nucleus	27.07	29.23
PGSC0003DMT400037080	Potato	nucleus	23.08	29.14
PGSC0003DMT400069644	Potato	nucleus	25.93	28.89
PGSC0003DMT400018897	Potato	nucleus	25.36	27.81
PGSC0003DMT400040774	Potato	nucleus	29.63	25.55
PGSC0003DMT400047076	Potato	nucleus	30.77	25.35

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102604248	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0045893	GO:GO:2000652	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1ABG8
InterPro:Myb_dom	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400007360	PGSC:PGSC0003DMG400007360	EnsemblPlants:PGSC0003DMT400018995	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF593	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000294BBF4
RefSeq:XP_006361760.1	SEG:seg	:	:	:	:

Description

MYB20 [Source:PGSC_GENE;Acc:PGSC0003DMG400007360]

Coordinates

chr11:-:38125207..38128456

Molecular Weight (calculated)

39234.7 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.712

Length

351 amino acids

Sequence
(BLAST)

001: MRKPEFSSSS SSSTKNSNNN NNNNTNVKLR KGLWSPEEDE KLMHYMLTNG QGCWSDVARN AGLQRCGKSC RLRWINYLRP DLKRGAFSPQ EEEHIIHLHS
101: ILGNRWSQIA ARLPGRTDNE IKNFWNSTLK KRLKNSSSSS TPSPNASDSS SDHPSKELNM GVTQQGFMPM LKHNLMSMYM DSTSPSSPSI ALNTINIDPL
201: PTLEHTLISI PNGFNVPSFL STTQPCMVQG GNSVSTNGGS LFYGNNHGIF GGNLSMEGHE LYVPPLENVS IEYQNVENGN FSHHQNNNNP NNMTNLINTS
301: HNFNTCSNIK VENFGGIGNY WEGDDVKVGE WDLEELMKDV SPFPFLDFQV E

Best Arabidopsis Sequence Match ( AT3G08500.1 )
(BLAST)

001: MMMRKPDITT IRDKGKPNHA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD

Arabidopsis Description

MYB83Transcription factor MYB83 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.