Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g082040.2.1 | Tomato | nucleus | 93.75 | 92.59 |
| KRH13791 | Soybean | nucleus | 47.81 | 47.08 |
| KRH43663 | Soybean | nucleus | 47.19 | 46.18 |
| Bra039339.1-P | Field mustard | nucleus | 41.56 | 45.24 |
| CDY43404 | Canola | nucleus | 41.56 | 45.24 |
| CDY08409 | Canola | nucleus | 41.25 | 44.9 |
| CDY42172 | Canola | nucleus | 41.25 | 44.9 |
| Bra034738.1-P | Field mustard | nucleus | 40.94 | 44.56 |
| CDY42171 | Canola | nucleus | 40.94 | 44.56 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 44.69 | 43.73 |
| VIT_01s0010g00410.t01 | Wine grape | nucleus | 46.25 | 42.9 |
| AT3G12720.1 | Thale cress | nucleus | 40.94 | 42.67 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 41.88 | 42.01 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 41.25 | 41.9 |
| PGSC0003DMT400087467 | Potato | nucleus | 34.06 | 39.64 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 46.25 | 38.74 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 45.62 | 38.52 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 45.94 | 38.48 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 45.31 | 37.96 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 45.31 | 37.96 |
| EER97244 | Sorghum | nucleus | 44.06 | 36.72 |
| Os07t0497500-00 | Rice | nucleus | 45.0 | 36.0 |
| Zm00001d021537_P001 | Maize | nucleus | 30.94 | 32.67 |
| PGSC0003DMT400069644 | Potato | nucleus | 31.25 | 31.75 |
| PGSC0003DMT400037080 | Potato | nucleus | 26.88 | 30.94 |
| PGSC0003DMT400046645 | Potato | nucleus | 30.94 | 30.46 |
| PGSC0003DMT400040774 | Potato | nucleus | 34.69 | 27.27 |
| PGSC0003DMT400047076 | Potato | nucleus | 35.31 | 26.53 |
| PGSC0003DMT400018995 | Potato | nucleus | 27.81 | 25.36 |
| PGSC0003DMT400017709 | Potato | nucleus | 27.19 | 24.51 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102588981 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1ABB6 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400007325 | PGSC:PGSC0003DMG400007325 | EnsemblPlants:PGSC0003DMT400018897 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF702 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002958DDC | RefSeq:XP_006363156.1 | SEG:seg |
Description
Transcription factor Myb [Source:PGSC_GENE;Acc:PGSC0003DMG400007325]
Coordinates
chr2:+:37715819..37717148
Molecular Weight (calculated)
36427.9 Da
IEP (calculated)
6.874
GRAVY (calculated)
-0.583
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHHCCSKQK VKRGLWSPEE DEKLIKHINT HGNSCWSSVP KLAGLQRCGK SCRLRWINYL RPDLKRGCFS EQEERIIIDV HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLISQGF DPNTHNLLST KKKANNNYTT SSIFTIETSL SSSSTKELVS MDLIKASLAA LSTFPNYTNM PQCQTSLSRL YGSVCVPTTT
201: NIIGNSNFAS TIDYKKQSTI INENCMWSIT GFETPHHEFG NGHEEMKQEG QVQVEEKNCQ EEVLYKVNDL HEFNNDGPRI AENVTFDEGS DFDFEFMDSE
301: LVPCGIFTNI NSIDQLAWNC
101: NEVKNFWNSC IKKKLISQGF DPNTHNLLST KKKANNNYTT SSIFTIETSL SSSSTKELVS MDLIKASLAA LSTFPNYTNM PQCQTSLSRL YGSVCVPTTT
201: NIIGNSNFAS TIDYKKQSTI INENCMWSIT GFETPHHEFG NGHEEMKQEG QVQVEEKNCQ EEVLYKVNDL HEFNNDGPRI AENVTFDEGS DFDFEFMDSE
301: LVPCGIFTNI NSIDQLAWNC
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.