Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P03510_001 | Banana | nucleus | 68.5 | 70.22 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 67.58 | 70.16 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 22.63 | 52.11 |
| EER97244 | Sorghum | nucleus | 58.41 | 49.74 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 56.27 | 48.17 |
| Os07t0497500-00 | Rice | nucleus | 58.72 | 48.0 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 55.35 | 47.76 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 55.66 | 47.64 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 55.05 | 47.12 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 54.74 | 46.86 |
| Zm00001d021537_P001 | Maize | nucleus | 42.2 | 45.54 |
| Solyc02g082040.2.1 | Tomato | nucleus | 44.34 | 44.75 |
| PGSC0003DMT400018897 | Potato | nucleus | 43.73 | 44.69 |
| Bra034738.1-P | Field mustard | nucleus | 39.45 | 43.88 |
| CDY42172 | Canola | nucleus | 39.45 | 43.88 |
| CDY42171 | Canola | nucleus | 39.45 | 43.88 |
| CDY08409 | Canola | nucleus | 39.45 | 43.88 |
| VIT_19s0085g00940.t01 | Wine grape | nucleus | 44.95 | 43.62 |
| KRH43663 | Soybean | nucleus | 43.12 | 43.12 |
| KRH13791 | Soybean | nucleus | 42.2 | 42.46 |
| AT3G12720.1 | Thale cress | nucleus | 39.76 | 42.35 |
| Bra039339.1-P | Field mustard | nucleus | 37.92 | 42.18 |
| CDY43404 | Canola | nucleus | 37.92 | 42.18 |
| Solyc10g005240.2.1 | Tomato | nucleus | 43.12 | 40.87 |
| GSMUA_Achr11P... | Banana | nucleus | 29.05 | 40.77 |
| VIT_01s0010g00410.t01 | Wine grape | nucleus | 42.81 | 40.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.95 | 40.36 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 31.19 | 36.04 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 32.72 | 35.79 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 31.5 | 33.55 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 33.95 | 33.23 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 31.19 | 33.22 |
| GSMUA_Achr10P... | Banana | nucleus | 29.66 | 32.66 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 24.16 | 32.11 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 34.86 | 31.67 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 25.99 | 31.14 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 29.97 | 31.11 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 29.36 | 30.87 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 25.99 | 30.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.3 | 30.39 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 31.8 | 30.23 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 28.13 | 30.07 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 33.33 | 29.86 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 31.19 | 29.74 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 33.64 | 29.73 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 25.08 | 29.5 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 25.08 | 29.39 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 26.61 | 29.29 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 27.22 | 29.18 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 27.22 | 28.9 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 33.03 | 28.8 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 25.38 | 28.62 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 31.19 | 28.33 |
| GSMUA_Achr11P... | Banana | nucleus | 32.11 | 28.0 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 25.99 | 27.42 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 31.19 | 26.77 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P11190_001 | EnsemblPlants:GSMUA_Achr9T11190_001 | EnsemblPlantsGene:GSMUA_Achr9G11190_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF702 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI00029543FB | UniProt:M0TZC8 | MapMan:15.5.2.1 | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G11190_001]
Coordinates
chr9:-:7282803..7283953
Molecular Weight (calculated)
36878.5 Da
IEP (calculated)
6.120
GRAVY (calculated)
-0.610
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHHCCSKQK VKRGLWSPEE DEKLVKYITS HGHSCWSTVP KEAGLQRCGK SCRLRWINYL RPDLKRGTFS EEEERIIIDV HRILGNRWAQ IAKHLPGRTD
101: NEVKNIWNSC IKKKLISQGL DPTTHNLFPS SRPTNGSINS DELHQLHYTR SPTTPFTISP PIRSHDRMKS PMELNPLLET PPHASVVPLH ETAPVPNFQY
201: QDDHVLMSFK DHGSHASLDF MNGSSSSSSL DHTNMSSSSF HEPGFIDDCM WDDSTVEPLE ALQQAEDLVQ AQPTMCRMGV DEASEKGMVM ETSYGSATLD
301: LEMMESALLP CGEFCSGSSM EHLQWDC
101: NEVKNIWNSC IKKKLISQGL DPTTHNLFPS SRPTNGSINS DELHQLHYTR SPTTPFTISP PIRSHDRMKS PMELNPLLET PPHASVVPLH ETAPVPNFQY
201: QDDHVLMSFK DHGSHASLDF MNGSSSSSSL DHTNMSSSSF HEPGFIDDCM WDDSTVEPLE ALQQAEDLVQ AQPTMCRMGV DEASEKGMVM ETSYGSATLD
301: LEMMESALLP CGEFCSGSSM EHLQWDC
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.