Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P11740_001 | |
| GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 16.53 | 84.93 |
| CDY05331 | Canola | nucleus | 28.8 | 81.82 |
| CDY05516 | Canola | nucleus | 28.53 | 81.06 |
| GSMUA_Achr11P... | Banana | nucleus | 41.07 | 66.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.4 | 63.27 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 55.47 | 56.99 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 55.47 | 56.22 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 21.07 | 55.63 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 41.07 | 54.42 |
| GSMUA_Achr11P... | Banana | nucleus | 53.87 | 53.87 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 46.13 | 51.8 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 48.27 | 50.28 |
| CDX93504 | Canola | nucleus | 38.13 | 48.64 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 43.73 | 47.81 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 43.2 | 47.09 |
| CDY50901 | Canola | nucleus | 37.33 | 46.82 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 44.53 | 46.39 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 37.87 | 46.25 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 46.93 | 46.19 |
| Bra020016.1-P | Field mustard | nucleus | 40.53 | 45.78 |
| CDY06359 | Canola | nucleus | 37.6 | 45.78 |
| CDY22635 | Canola | nucleus | 37.33 | 45.31 |
| Zm00001d040527_P001 | Maize | nucleus | 33.33 | 44.48 |
| Bra031669.1-P | Field mustard | nucleus | 38.4 | 44.04 |
| AT1G57560.1 | Thale cress | nucleus | 36.8 | 43.95 |
| CDY32188 | Canola | nucleus | 39.2 | 43.75 |
| CDY31082 | Canola | nucleus | 40.0 | 43.35 |
| Zm00001d024784_P001 | Maize | nucleus | 29.33 | 42.97 |
| Bra030783.1-P | Field mustard | nucleus | 39.47 | 42.9 |
| EES02806 | Sorghum | nucleus | 48.27 | 42.39 |
| Os05t0140100-01 | Rice | nucleus | 48.27 | 42.39 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 49.6 | 42.37 |
| Os01t0285300-01 | Rice | nucleus | 47.73 | 41.82 |
| AT1G09540.1 | Thale cress | nucleus | 40.8 | 41.8 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 34.13 | 41.69 |
| PGSC0003DMT400040774 | Potato | nucleus | 44.53 | 41.03 |
| KRH68350 | Soybean | nucleus | 45.6 | 40.91 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 49.07 | 40.8 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 46.4 | 40.56 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 46.4 | 40.56 |
| OQU77376 | Sorghum | nucleus | 46.4 | 40.47 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 46.4 | 40.47 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 46.4 | 40.37 |
| Zm00001d010907_P001 | Maize | nucleus | 45.6 | 40.14 |
| KRH33726 | Soybean | nucleus | 45.87 | 40.09 |
| KRG96660 | Soybean | nucleus | 46.4 | 40.09 |
| Solyc10g044680.1.1 | Tomato | nucleus | 42.4 | 39.95 |
| KRH68389 | Soybean | nucleus | 44.0 | 39.47 |
| KRH69136 | Soybean | nucleus | 45.6 | 39.4 |
| Bra036317.1-P | Field mustard | nucleus | 34.93 | 38.99 |
| CDY07124 | Canola | nucleus | 34.93 | 38.99 |
| CDY58217 | Canola | nucleus | 34.93 | 38.99 |
| Bra036588.1-P | Field mustard | nucleus | 34.67 | 38.81 |
| KRG90431 | Soybean | nucleus | 44.27 | 38.78 |
| CDX87038 | Canola | nucleus | 34.93 | 38.76 |
| Solyc01g102340.2.1 | Tomato | nucleus | 44.0 | 38.73 |
| PGSC0003DMT400047076 | Potato | nucleus | 44.0 | 38.73 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 32.53 | 38.73 |
| CDY68301 | Canola | nucleus | 34.4 | 38.51 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 31.2 | 38.24 |
| AT4G01680.2 | Thale cress | nucleus | 34.93 | 37.64 |
| KRH33667 | Soybean | nucleus | 45.6 | 37.5 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 29.6 | 36.39 |
| AT5G26660.1 | Thale cress | nucleus | 34.13 | 36.36 |
| CDX88230 | Canola | nucleus | 33.6 | 35.39 |
| CDX80576 | Canola | nucleus | 33.6 | 35.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.13 | 34.63 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 27.47 | 34.45 |
| KRG96619 | Soybean | plastid, vacuole | 45.33 | 34.34 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 28.27 | 34.19 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 25.07 | 33.69 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 28.8 | 33.03 |
| GSMUA_Achr10P... | Banana | nucleus | 26.13 | 33.0 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 21.33 | 32.52 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 23.73 | 32.01 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 23.73 | 31.9 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 25.07 | 31.65 |
| Bra009910.1-P | Field mustard | nucleus | 27.2 | 30.91 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 25.87 | 30.79 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 25.87 | 30.41 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 21.6 | 29.67 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 24.53 | 29.58 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 24.0 | 29.22 |
| Bra020526.1-P | Field mustard | nucleus | 33.33 | 28.41 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 21.33 | 27.59 |
| CDY05517 | Canola | plastid | 4.53 | 9.94 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P18400_001 | EnsemblPlants:GSMUA_Achr5T18400_001 | EnsemblPlantsGene:GSMUA_Achr5G18400_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000296AC95 | UniProt:M0SZL9 | MapMan:15.5.2.1 | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G18400_001]
Coordinates
chr5:+:19855207..19860448
Molecular Weight (calculated)
41863.6 Da
IEP (calculated)
7.670
GRAVY (calculated)
-0.550
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGHSCCYKQ KLRKGLWSPE EDEKLIKHIA KYGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGTF SQQEEDLIIE LHAVLGNRWS KIAAHLPGRT
101: DNEIKNLWNS CIKKKLRQRG IDPNTHKPLA EVEGGDEKPL DESTTPKGSS TPTKELLLDQ LLATHESTLS CRSSISMGCF PLPQLSRAPD FCGNPTTLAA
201: LPISSNPLLW LNHTATHSRR SMVNDATSMA LQSSCSFDSG ISAWSDLTPD KDVQVHLGED NQDLKWSEYL HGAFPATAAT QAQCQPLYLD VKRGGQFAMN
301: GLSTWHQSPQ LQQQSHASDI YAKDFHSETM IVDLNNSDRL NQCNYSPEEC MQNLTGKLVC VLSSKSNAYL YHLVV
101: DNEIKNLWNS CIKKKLRQRG IDPNTHKPLA EVEGGDEKPL DESTTPKGSS TPTKELLLDQ LLATHESTLS CRSSISMGCF PLPQLSRAPD FCGNPTTLAA
201: LPISSNPLLW LNHTATHSRR SMVNDATSMA LQSSCSFDSG ISAWSDLTPD KDVQVHLGED NQDLKWSEYL HGAFPATAAT QAQCQPLYLD VKRGGQFAMN
301: GLSTWHQSPQ LQQQSHASDI YAKDFHSETM IVDLNNSDRL NQCNYSPEEC MQNLTGKLVC VLSSKSNAYL YHLVV
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS CLKKKLRLRG IDPVTHKLLT EIETGTDDKT KPVEKSQQTY LVETDGSSST TTCSTNQNNN TDHLYTGNFG FQRLSLENGS RIAAGSDLGI
201: WIPQTGRNHH HHVDETIPSA VVLPGSMFSS GLTGYRSSNL GLIELENSFS TGPMMTEHQQ IQESNYNNST FFGNGNLNWG LTMEENQNPF TISNHSNSSL
301: YSDIKSETNF FGTEATNVGM WPCNQLQPQQ HAYGHI
101: DNEIKNLWNS CLKKKLRLRG IDPVTHKLLT EIETGTDDKT KPVEKSQQTY LVETDGSSST TTCSTNQNNN TDHLYTGNFG FQRLSLENGS RIAAGSDLGI
201: WIPQTGRNHH HHVDETIPSA VVLPGSMFSS GLTGYRSSNL GLIELENSFS TGPMMTEHQQ IQESNYNNST FFGNGNLNWG LTMEENQNPF TISNHSNSSL
301: YSDIKSETNF FGTEATNVGM WPCNQLQPQQ HAYGHI
Arabidopsis Description
MYB55Myb domain protein 55 [Source:UniProtKB/TrEMBL;Acc:Q9ZSI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.