Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P11740_001 | |
| GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 22.26 | 86.3 |
| CDY05331 | Canola | nucleus | 38.52 | 82.58 |
| CDY05516 | Canola | nucleus | 38.16 | 81.82 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 27.56 | 54.93 |
| GSMUA_Achr11P... | Banana | nucleus | 44.52 | 54.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.53 | 52.0 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 57.6 | 48.8 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 59.36 | 46.67 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 50.53 | 46.58 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 54.42 | 44.77 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 53.36 | 44.02 |
| CDY06359 | Canola | nucleus | 47.7 | 43.83 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 56.18 | 43.56 |
| AT1G57560.1 | Thale cress | nucleus | 48.06 | 43.31 |
| CDY22635 | Canola | nucleus | 47.0 | 43.04 |
| CDX93504 | Canola | nucleus | 44.17 | 42.52 |
| Bra031669.1-P | Field mustard | nucleus | 49.12 | 42.51 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 53.71 | 42.22 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 54.42 | 41.62 |
| CDY50901 | Canola | nucleus | 43.82 | 41.47 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 54.42 | 41.07 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 55.12 | 40.94 |
| Bra020016.1-P | Field mustard | nucleus | 47.35 | 40.36 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 43.46 | 40.07 |
| GSMUA_Achr11P... | Banana | nucleus | 52.65 | 39.73 |
| Zm00001d024784_P001 | Maize | nucleus | 35.69 | 39.45 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 41.34 | 38.24 |
| CDY31082 | Canola | nucleus | 46.64 | 38.15 |
| Bra030783.1-P | Field mustard | nucleus | 46.29 | 37.97 |
| CDY32188 | Canola | nucleus | 44.88 | 37.8 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 42.05 | 37.78 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 59.72 | 37.47 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 39.93 | 37.05 |
| Zm00001d040527_P001 | Maize | nucleus | 36.4 | 36.65 |
| AT1G09540.1 | Thale cress | nucleus | 47.35 | 36.61 |
| KRH33726 | Soybean | nucleus | 55.12 | 36.36 |
| Bra036317.1-P | Field mustard | nucleus | 43.11 | 36.31 |
| CDY07124 | Canola | nucleus | 43.11 | 36.31 |
| CDY58217 | Canola | nucleus | 43.11 | 36.31 |
| KRH68389 | Soybean | nucleus | 53.36 | 36.12 |
| Bra036588.1-P | Field mustard | nucleus | 42.76 | 36.12 |
| CDY68301 | Canola | nucleus | 42.76 | 36.12 |
| PGSC0003DMT400040774 | Potato | nucleus | 51.94 | 36.12 |
| KRG96660 | Soybean | nucleus | 55.12 | 35.94 |
| PGSC0003DMT400047076 | Potato | nucleus | 54.06 | 35.92 |
| CDX87038 | Canola | nucleus | 42.76 | 35.8 |
| KRG90431 | Soybean | nucleus | 54.06 | 35.75 |
| Os05t0140100-01 | Rice | nucleus | 53.71 | 35.6 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 55.12 | 35.54 |
| Solyc01g102340.2.1 | Tomato | nucleus | 53.36 | 35.45 |
| AT5G26660.1 | Thale cress | nucleus | 43.82 | 35.23 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 37.1 | 35.12 |
| OQU77376 | Sorghum | nucleus | 53.36 | 35.12 |
| AT4G01680.2 | Thale cress | nucleus | 43.11 | 35.06 |
| KRH69136 | Soybean | nucleus | 53.71 | 35.02 |
| KRH68350 | Soybean | nucleus | 51.59 | 34.93 |
| Solyc10g044680.1.1 | Tomato | nucleus | 48.76 | 34.67 |
| EES02806 | Sorghum | nucleus | 52.3 | 34.66 |
| Zm00001d010907_P001 | Maize | nucleus | 51.94 | 34.51 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 51.59 | 34.03 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 51.59 | 34.03 |
| GSMUA_Achr10P... | Banana | nucleus | 35.69 | 34.01 |
| CDX88230 | Canola | nucleus | 42.76 | 33.99 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 51.59 | 33.95 |
| CDX80576 | Canola | nucleus | 42.76 | 33.89 |
| Os01t0285300-01 | Rice | nucleus | 51.24 | 33.88 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 51.59 | 33.87 |
| KRH33667 | Soybean | nucleus | 54.42 | 33.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.57 | 33.57 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 32.86 | 33.33 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 35.69 | 32.58 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 35.69 | 32.48 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 33.57 | 31.99 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 31.45 | 31.9 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 27.56 | 31.71 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 36.04 | 31.19 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 30.39 | 30.94 |
| KRG96619 | Soybean | plastid, vacuole | 51.94 | 29.7 |
| Bra009910.1-P | Field mustard | nucleus | 34.28 | 29.39 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 32.86 | 29.15 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 32.16 | 28.89 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 30.39 | 27.92 |
| Bra020526.1-P | Field mustard | nucleus | 42.76 | 27.5 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 26.5 | 27.47 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 26.86 | 26.21 |
| CDY05517 | Canola | plastid | 3.89 | 6.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P19560_001 | EnsemblPlants:GSMUA_Achr4T19560_001 | EnsemblPlantsGene:GSMUA_Achr4G19560_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000295BD95 | UniProt:M0SQB9 | MapMan:15.5.2.1 | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G19560_001]
Coordinates
chr4:+:20495181..20496718
Molecular Weight (calculated)
31527.1 Da
IEP (calculated)
7.027
GRAVY (calculated)
-0.506
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLVKHIA KYGHGCWSSV PKLADLQRCG KSCRLRWINY LRPDLKRGTF SQQEEKLIIE LHAAVGNRWS QIAAQLPGRT
101: DNEIKNYWNS CIKKKLRQSG IDPSTHRPLS EVEGGDDKEA MASGRSSTSA PPPSHTIECT PLLQANDVVV PSSISISVPD LRCLEAGSCS NTSANSANSS
201: SEFELQISSS LFDGSIFQWL ELFPSKGAQH HFDGEPEDLK WSEYLNGTIG SDDGLLGEIK KDTLFSSISF SDVHIISYFH KII
101: DNEIKNYWNS CIKKKLRQSG IDPSTHRPLS EVEGGDDKEA MASGRSSTSA PPPSHTIECT PLLQANDVVV PSSISISVPD LRCLEAGSCS NTSANSANSS
201: SEFELQISSS LFDGSIFQWL ELFPSKGAQH HFDGEPEDLK WSEYLNGTIG SDDGLLGEIK KDTLFSSISF SDVHIISYFH KII
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.