Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G210400.2 | |
| TraesCS3B01G241000.1 | |
| TraesCS3D01G213200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | TraesCS3A01G210400.2 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | TraesCS3B01G241000.1 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | TraesCS3D01G213200.1 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G083100.2 | Wheat | nucleus | 99.77 | 99.53 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 98.83 | 98.83 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 98.83 | 98.38 |
| Os05t0140100-01 | Rice | nucleus | 92.54 | 92.97 |
| OQU77376 | Sorghum | nucleus | 89.04 | 88.84 |
| Zm00001d010907_P001 | Maize | nucleus | 87.18 | 87.79 |
| CDY05331 | Canola | nucleus | 26.57 | 86.36 |
| CDY05516 | Canola | nucleus | 26.34 | 85.61 |
| Zm00001d024784_P001 | Maize | nucleus | 45.92 | 76.95 |
| GSMUA_Achr11P... | Banana | nucleus | 31.7 | 58.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.2 | 54.91 |
| CDX93504 | Canola | nucleus | 36.13 | 52.72 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 37.3 | 52.12 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 34.03 | 51.59 |
| CDY50901 | Canola | nucleus | 35.9 | 51.51 |
| CDY22635 | Canola | nucleus | 36.83 | 51.13 |
| Bra030783.1-P | Field mustard | nucleus | 40.79 | 50.72 |
| CDY06359 | Canola | nucleus | 36.36 | 50.65 |
| CDY31082 | Canola | nucleus | 40.79 | 50.58 |
| CDY32188 | Canola | nucleus | 39.39 | 50.3 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 42.66 | 50.14 |
| AT1G57560.1 | Thale cress | nucleus | 36.36 | 49.68 |
| Bra031669.1-P | Field mustard | nucleus | 37.76 | 49.54 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 41.26 | 49.17 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 39.16 | 48.98 |
| Bra020016.1-P | Field mustard | nucleus | 37.76 | 48.8 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 38.93 | 48.55 |
| CDY68301 | Canola | nucleus | 37.06 | 47.46 |
| Bra036588.1-P | Field mustard | nucleus | 37.06 | 47.46 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 36.6 | 47.01 |
| CDX87038 | Canola | nucleus | 36.83 | 46.75 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 40.56 | 46.4 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 39.86 | 46.22 |
| AT1G09540.1 | Thale cress | nucleus | 39.39 | 46.17 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 38.46 | 45.83 |
| TraesCS7D01G340300.1 | Wheat | nucleus | 30.3 | 45.3 |
| TraesCS3D01G255400.1 | Wheat | nucleus | 30.07 | 45.26 |
| AT5G26660.1 | Thale cress | nucleus | 37.06 | 45.17 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 45.69 | 44.65 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 39.63 | 44.62 |
| KRG90431 | Soybean | nucleus | 44.06 | 44.16 |
| GSMUA_Achr11P... | Banana | nucleus | 38.46 | 44.0 |
| CDX80576 | Canola | nucleus | 36.36 | 43.7 |
| TraesCS1D01G371700.1 | Wheat | nucleus | 29.84 | 43.69 |
| CDX88230 | Canola | nucleus | 36.13 | 43.54 |
| KRH33726 | Soybean | nucleus | 43.12 | 43.12 |
| TraesCS1D01G371800.1 | Wheat | nucleus | 29.14 | 43.1 |
| KRH68389 | Soybean | nucleus | 41.96 | 43.06 |
| TraesCS3D01G251600.1 | Wheat | nucleus | 29.37 | 43.0 |
| TraesCS1D01G371900.1 | Wheat | nucleus | 27.74 | 42.35 |
| TraesCS4D01G309700.1 | Wheat | nucleus | 21.68 | 42.27 |
| KRG96660 | Soybean | nucleus | 42.66 | 42.17 |
| PGSC0003DMT400047076 | Potato | nucleus | 41.03 | 41.31 |
| PGSC0003DMT400040774 | Potato | nucleus | 39.16 | 41.28 |
| Solyc01g102340.2.1 | Tomato | nucleus | 40.79 | 41.08 |
| TraesCS1D01G371500.1 | Wheat | nucleus | 28.21 | 40.6 |
| Solyc10g044680.1.1 | Tomato | nucleus | 37.53 | 40.45 |
| TraesCS1D01G371400.1 | Wheat | nucleus | 28.44 | 40.26 |
| Bra009910.1-P | Field mustard | nucleus | 29.84 | 38.79 |
| TraesCS2D01G158200.1 | Wheat | nucleus | 31.0 | 38.11 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 23.54 | 36.59 |
| TraesCS2D01G158300.1 | Wheat | nucleus | 24.01 | 36.14 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 23.31 | 35.59 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 23.31 | 35.34 |
| Bra020526.1-P | Field mustard | nucleus | 34.73 | 33.86 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 21.68 | 31.53 |
| TraesCS7D01G300000.1 | Wheat | nucleus | 24.48 | 30.61 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 22.14 | 30.06 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 25.17 | 28.27 |
| TraesCS3D01G094500.1 | Wheat | nucleus | 18.65 | 28.07 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 25.17 | 27.76 |
| CDY05517 | Canola | plastid | 6.99 | 17.54 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G084400.1 | EnsemblPlantsGene:TraesCS1D01G084400 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:68445970..68447979
Molecular Weight (calculated)
47285.3 Da
IEP (calculated)
6.641
GRAVY (calculated)
-0.643
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF AQDEEDLIVE LHAVLGNRWS QIAAQMPGRT
101: DNEIKNLWNS SLKKKLRQKG IDPNTHKPLT EADRSGAAPT ISTERTSGSS DVNPSSAGAL GNFGHLLSET AQSSMLLPVY DKKRPETPSL ARPKVPAKEL
201: FLDQLTAGHE SPSSCRSSGP TLYFPFQQQL GYSNECGSGD GANMNSLWFN QNDFSCNTIS TVMPTVSPSA LSTPMGLNLP PDNHRHGGTG IGSAPFYWDG
301: VNPSSSGSTG SSGSNSMGFE PQSTNSILEN SVFPWTDIGV GQEKDTRVQL VEELKWPDLL HGTFAEATTA MQNQSQSLYD DVIKAESQFN MEGICASWFQ
401: NQQPQQQLQA ASDMYDKDLQ RMPLSFEHI
101: DNEIKNLWNS SLKKKLRQKG IDPNTHKPLT EADRSGAAPT ISTERTSGSS DVNPSSAGAL GNFGHLLSET AQSSMLLPVY DKKRPETPSL ARPKVPAKEL
201: FLDQLTAGHE SPSSCRSSGP TLYFPFQQQL GYSNECGSGD GANMNSLWFN QNDFSCNTIS TVMPTVSPSA LSTPMGLNLP PDNHRHGGTG IGSAPFYWDG
301: VNPSSSGSTG SSGSNSMGFE PQSTNSILEN SVFPWTDIGV GQEKDTRVQL VEELKWPDLL HGTFAEATTA MQNQSQSLYD DVIKAESQFN MEGICASWFQ
401: NQQPQQQLQA ASDMYDKDLQ RMPLSFEHI
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.