Factsheet for TraesCS4D01G309700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G312100.1	Wheat	nucleus	91.82	77.39
TraesCS4A01G411900.1	Wheat	nucleus	88.64	77.08
TraesCS7D01G340300.1	Wheat	nucleus	44.09	33.8
TraesCS1D01G371800.1	Wheat	nucleus	42.27	32.07
TraesCS1D01G371900.1	Wheat	nucleus	40.91	32.03
TraesCS3D01G255400.1	Wheat	nucleus	40.91	31.58
TraesCS1D01G371700.1	Wheat	nucleus	41.82	31.4
TraesCS1D01G371500.1	Wheat	nucleus	41.36	30.54
TraesCS1D01G371400.1	Wheat	nucleus	41.36	30.03
TraesCS2D01G158300.1	Wheat	nucleus	38.18	29.47
TraesCS2D01G158200.1	Wheat	nucleus	44.09	27.79
Zm00001d022259_P002	Maize	nucleus	43.18	27.22
TraesCS3D01G251600.1	Wheat	nucleus	35.45	26.62
TraesCS2D01G366800.1	Wheat	nucleus	33.18	26.45
TraesCS2D01G366900.1	Wheat	nucleus	33.18	25.8
TraesCS2D01G367000.1	Wheat	nucleus	32.27	25.27
EER97608	Sorghum	nucleus	43.64	25.2
TraesCS6D01G043600.1	Wheat	nucleus	33.18	23.1
TraesCS6D01G219300.1	Wheat	nucleus	30.91	23.05
TraesCS3D01G094500.1	Wheat	nucleus	28.64	22.11
TraesCS1D01G084400.1	Wheat	nucleus	42.27	21.68
TraesCS7D01G300000.1	Wheat	nucleus	33.64	21.57
TraesCS2D01G234000.1	Wheat	nucleus	35.45	20.42
TraesCS5D01G113300.1	Wheat	nucleus	33.18	18.77

Protein Annotations

EnsemblPlants:TraesCS4D01G309700.1	EnsemblPlantsGene:TraesCS4D01G309700	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF601	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:477164440..477165291

Molecular Weight (calculated)

23889.1 Da

IEP (calculated)

8.248

GRAVY (calculated)

-0.578

Length

220 amino acids

Sequence
(BLAST)

001: MSKAPRGPRK AVRRGPWSRE EDAKLTDHIA KHGLGRWSDI PRLAGIERGG KSCRLRWLNY LRPDLKRAAL SQEEEDLIIQ LHSIIGNSWT LIAACLPGRT
101: DNGVKNFWNA SIKHKLRRRG IDPDTHEPMV DEGTRNGDAQ HILPSHLAAG SNTCSHGALP LPDSITSYVD TDPLELQHGV VLVQPVVSSS SKVGSDPSST
201: GSDTGEQCPN GADRAASCSI

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.