Factsheet for TraesCS2D01G158300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G152900.1	Wheat	nucleus	80.35	95.82
TraesCS2B01G178000.1	Wheat	nucleus	55.44	81.03
TraesCS2D01G158200.1	Wheat	nucleus	82.46	67.34
Zm00001d022259_P002	Maize	nucleus	62.46	51.0
EER97608	Sorghum	nucleus	65.26	48.82
TraesCS7D01G340300.1	Wheat	nucleus	44.56	44.25
TraesCS4D01G309700.1	Wheat	nucleus	29.47	38.18
TraesCS1D01G371800.1	Wheat	nucleus	36.14	35.52
TraesCS1D01G371900.1	Wheat	nucleus	34.74	35.23
TraesCS3D01G255400.1	Wheat	nucleus	35.09	35.09
TraesCS1D01G371700.1	Wheat	nucleus	34.74	33.79
TraesCS1D01G371400.1	Wheat	nucleus	35.09	33.0
TraesCS1D01G371500.1	Wheat	nucleus	33.68	32.21
TraesCS3D01G251600.1	Wheat	nucleus	29.12	28.33
TraesCS2D01G366800.1	Wheat	nucleus	26.32	27.17
TraesCS2D01G367000.1	Wheat	nucleus	26.67	27.05
TraesCS2D01G366900.1	Wheat	nucleus	26.32	26.5
TraesCS3D01G094500.1	Wheat	nucleus	25.96	25.96
TraesCS6D01G219300.1	Wheat	nucleus	25.26	24.41
TraesCS1D01G084400.1	Wheat	nucleus	36.14	24.01
TraesCS7D01G300000.1	Wheat	nucleus	28.77	23.91
TraesCS6D01G043600.1	Wheat	nucleus	25.61	23.1
TraesCS2D01G234000.1	Wheat	nucleus	30.88	23.04
TraesCS5D01G113300.1	Wheat	nucleus	31.23	22.88

Protein Annotations

EnsemblPlants:TraesCS2D01G158300.1	EnsemblPlantsGene:TraesCS2D01G158300	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF601	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:101955702..101957039

Molecular Weight (calculated)

30573.8 Da

IEP (calculated)

8.589

GRAVY (calculated)

-0.504

Length

285 amino acids

Sequence
(BLAST)

001: MSKRPGATKK RLKRGLWSPE EDEKLMNHVA QYGYGCWSSV AKIAGLERCG KSCRLRWMHY LTPDRGGPFS QGEEDLIIHL HSIRGNKWSQ IAAQLPGRTD
101: NEVKNFWNSI IKKKLRQRRI DPAIHKPLAH AGAAAAATPV SRTAVFSEAE LILSSPVGTQ PMPPLVSAES YVYSRGSMDG AGGAHAALGG CSDDGSLSSL
201: SGYNNNQTAD FAGYLDADAL HGAVIPSVWS SSTLNWMAGV SPGGAVNTNA TTHEPCCNNN NPSNRGSGFE SSMTQSSSNH HLPDQ

Best Arabidopsis Sequence Match ( AT1G57560.1 )
(BLAST)

001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL

Arabidopsis Description

AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.