Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G370300.1 | Wheat | nucleus | 96.01 | 95.67 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 93.84 | 94.53 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 92.39 | 93.07 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 88.04 | 86.48 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 88.41 | 86.22 |
| Os04t0532800-01 | Rice | nucleus | 72.83 | 73.63 |
| EES11177 | Sorghum | nucleus | 75.0 | 69.46 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 73.19 | 66.45 |
| Solyc01g009650.1.1 | Tomato | nucleus | 21.74 | 65.93 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 64.13 | 60.0 |
| Bra013900.1-P | Field mustard | nucleus | 33.7 | 43.26 |
| PGSC0003DMT400037080 | Potato | nucleus | 40.22 | 39.93 |
| KRH35334 | Soybean | nucleus | 38.41 | 39.26 |
| CDY32589 | Canola | nucleus | 35.51 | 39.04 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 42.03 | 38.93 |
| CDY64708 | Canola | nucleus | 36.23 | 38.76 |
| Bra018027.1-P | Field mustard | nucleus | 35.87 | 38.37 |
| KRH09018 | Soybean | nucleus | 40.22 | 38.14 |
| CDY05881 | Canola | nucleus | 35.51 | 37.98 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 43.48 | 37.97 |
| Solyc03g025870.2.1 | Tomato | nucleus | 38.04 | 37.63 |
| KRH38485 | Soybean | nucleus | 39.49 | 37.46 |
| CDX94440 | Canola | nucleus | 34.78 | 37.35 |
| AT5G52260.1 | Thale cress | nucleus | 36.23 | 37.31 |
| CDY50197 | Canola | nucleus | 33.7 | 37.2 |
| AT4G25560.1 | Thale cress | nucleus | 38.04 | 37.1 |
| Bra029129.1-P | Field mustard | nucleus | 35.87 | 37.08 |
| CDY38910 | Canola | nucleus | 35.87 | 37.08 |
| AT3G48920.1 | Thale cress | nucleus | 34.42 | 36.4 |
| CDX89413 | Canola | nucleus | 35.51 | 36.3 |
| CDX92718 | Canola | nucleus | 33.33 | 35.11 |
| TraesCS4D01G309700.1 | Wheat | nucleus | 26.45 | 33.18 |
| KRG91494 | Soybean | nucleus | 38.41 | 31.83 |
| TraesCS7D01G340300.1 | Wheat | nucleus | 32.97 | 31.71 |
| TraesCS3D01G255400.1 | Wheat | nucleus | 32.61 | 31.58 |
| TraesCS1D01G371700.1 | Wheat | nucleus | 33.33 | 31.4 |
| TraesCS1D01G371800.1 | Wheat | nucleus | 32.25 | 30.69 |
| TraesCS1D01G371900.1 | Wheat | nucleus | 30.43 | 29.89 |
| TraesCS1D01G371500.1 | Wheat | nucleus | 31.88 | 29.53 |
| TraesCS3D01G251600.1 | Wheat | nucleus | 30.8 | 29.01 |
| TraesCS1D01G371400.1 | Wheat | nucleus | 31.16 | 28.38 |
| TraesCS2D01G158300.1 | Wheat | nucleus | 27.17 | 26.32 |
| TraesCS3D01G094500.1 | Wheat | nucleus | 26.81 | 25.96 |
| TraesCS2D01G158200.1 | Wheat | nucleus | 32.61 | 25.79 |
| TraesCS7D01G300000.1 | Wheat | nucleus | 31.16 | 25.07 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 36.59 | 23.54 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 32.25 | 23.3 |
| Bra019154.1-P | Field mustard | nucleus | 35.87 | 21.48 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 28.99 | 20.57 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G366800.1 | EnsemblPlantsGene:TraesCS2D01G366800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:471371487..471373628
Molecular Weight (calculated)
29870.0 Da
IEP (calculated)
7.125
GRAVY (calculated)
-0.603
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKSCQKPK AQHRKGLWSP EEDQKLRDYI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN YLRPGLKHGM FSREEEETVM SLHATLGNKW SQIAQHLPGR
101: TDNEVKNYWN SYLKKRVEGA RAPAKSAGSD APRSPMPSDS GRERSTVNQP SNSGSSGPPE SSSTADDSSS LTGPDAAAAL IRPHAPVLPK VMFADWLDMD
201: MDYGTGLMAP RTLDAAFDCS PAQQGASSTV DGRCGAVDSL HGLGDGGICW EFEADMQGGG AGFCDLLSMS EFLGIN
101: TDNEVKNYWN SYLKKRVEGA RAPAKSAGSD APRSPMPSDS GRERSTVNQP SNSGSSGPPE SSSTADDSSS LTGPDAAAAL IRPHAPVLPK VMFADWLDMD
201: MDYGTGLMAP RTLDAAFDCS PAQQGASSTV DGRCGAVDSL HGLGDGGICW EFEADMQGGG AGFCDLLSMS EFLGIN
001: MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY LRPGLKRGSF SEEEEETILT LHSSLGNKWS RIAKYLPGRT
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
Arabidopsis Description
AtMYB19MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.