Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92718 | Canola | nucleus | 96.8 | 92.37 |
| CDX94440 | Canola | nucleus | 73.2 | 71.21 |
| CDX89413 | Canola | nucleus | 75.6 | 70.0 |
| AT4G25560.1 | Thale cress | nucleus | 78.0 | 68.9 |
| Solyc01g009650.1.1 | Tomato | nucleus | 22.8 | 62.64 |
| CDY32589 | Canola | nucleus | 57.6 | 57.37 |
| CDY38910 | Canola | nucleus | 60.8 | 56.93 |
| CDY05516 | Canola | nucleus | 30.0 | 56.82 |
| CDY05331 | Canola | nucleus | 29.6 | 56.06 |
| Bra019154.1-P | Field mustard | nucleus | 98.8 | 53.58 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 30.0 | 52.82 |
| CDY05881 | Canola | nucleus | 39.6 | 38.37 |
| CDY64708 | Canola | nucleus | 38.4 | 37.21 |
| KRH35334 | Soybean | nucleus | 40.0 | 37.04 |
| KRH09018 | Soybean | nucleus | 42.0 | 36.08 |
| KRH38485 | Soybean | nucleus | 42.0 | 36.08 |
| Os04t0532800-01 | Rice | nucleus | 38.8 | 35.53 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 34.4 | 34.96 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 38.8 | 34.77 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 38.0 | 34.3 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 38.4 | 34.16 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 37.6 | 33.94 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 38.4 | 33.92 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 38.4 | 33.92 |
| PGSC0003DMT400037080 | Potato | nucleus | 37.6 | 33.81 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 37.2 | 33.7 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 36.8 | 33.58 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 38.0 | 33.57 |
| Solyc03g025870.2.1 | Tomato | nucleus | 37.2 | 33.33 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 36.4 | 33.21 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 36.4 | 32.62 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 40.0 | 32.47 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 36.0 | 32.37 |
| Zm00001d051267_P001 | Maize | nucleus | 36.0 | 32.37 |
| Zm00001d017383_P001 | Maize | nucleus | 37.2 | 31.96 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 36.4 | 31.71 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 38.0 | 31.25 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 37.2 | 31.21 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 27.6 | 30.94 |
| EES11177 | Sorghum | nucleus | 36.8 | 30.87 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 36.4 | 30.85 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 36.4 | 30.85 |
| KRG91494 | Soybean | nucleus | 40.4 | 30.33 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 36.8 | 29.87 |
| EES07547 | Sorghum | nucleus | 36.4 | 29.84 |
| EES06150 | Sorghum | nucleus | 35.6 | 29.77 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 32.4 | 29.67 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 34.0 | 29.31 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 34.8 | 28.25 |
| Zm00001d014989_P001 | Maize | nucleus | 34.4 | 27.92 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 34.8 | 27.8 |
| CDY42171 | Canola | nucleus | 32.4 | 27.55 |
| CDY08409 | Canola | nucleus | 32.4 | 27.55 |
| CDY42172 | Canola | nucleus | 32.4 | 27.55 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 34.8 | 27.53 |
| CDY43404 | Canola | nucleus | 32.0 | 27.21 |
| CDX93504 | Canola | nucleus | 30.8 | 26.19 |
| CDY22635 | Canola | nucleus | 32.0 | 25.89 |
| CDX85684 | Canola | nucleus | 28.8 | 25.81 |
| CDY50901 | Canola | nucleus | 30.8 | 25.75 |
| CDY53970 | Canola | nucleus | 28.8 | 25.71 |
| CDX78493 | Canola | nucleus | 28.8 | 25.71 |
| CDX91158 | Canola | nucleus | 28.4 | 25.54 |
| CDY06359 | Canola | nucleus | 31.2 | 25.32 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 34.8 | 24.51 |
| CDY32188 | Canola | nucleus | 32.8 | 24.4 |
| CDY31082 | Canola | nucleus | 33.2 | 23.99 |
| CDY68301 | Canola | nucleus | 31.6 | 23.58 |
| CDX87038 | Canola | nucleus | 31.6 | 23.37 |
| CDY58217 | Canola | nucleus | 31.2 | 23.21 |
| CDY07124 | Canola | nucleus | 31.2 | 23.21 |
| CDY27999 | Canola | nucleus | 30.4 | 22.69 |
| CDX88230 | Canola | nucleus | 32.0 | 22.47 |
| CDX80576 | Canola | nucleus | 32.0 | 22.41 |
| CDY39077 | Canola | nucleus | 31.6 | 22.13 |
| CDY37496 | Canola | nucleus | 31.6 | 22.13 |
| CDY35982 | Canola | nucleus | 29.6 | 22.09 |
| CDY55231 | Canola | nucleus | 28.8 | 21.95 |
| CDX74013 | Canola | nucleus | 29.2 | 21.47 |
| CDY70536 | Canola | nucleus | 29.2 | 21.28 |
| CDX97526 | Canola | nucleus | 27.6 | 20.35 |
| CDX97209 | Canola | nucleus | 28.8 | 20.34 |
| CDY08343 | Canola | nucleus | 29.6 | 20.05 |
| CDY38211 | Canola | nucleus | 29.6 | 20.05 |
| CDY25547 | Canola | nucleus | 29.2 | 19.73 |
| CDY34386 | Canola | extracellular | 12.4 | 10.33 |
| CDY70493 | Canola | cytosol, plastid | 2.4 | 4.55 |
| CDY70602 | Canola | nucleus, plastid | 2.8 | 4.49 |
| CDY05517 | Canola | plastid | 1.2 | 1.75 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078IJW6 | UniProt:A0A078IJW6 | EnsemblPlants:CDY50197 | ProteinID:CDY50197 |
| ProteinID:CDY50197.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00096130001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF563 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE1E6F | SEG:seg |
Description
BnaA03g47510DBnaA03g47510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJW6]
Coordinates
chrLK032888:-:75480..76410
Molecular Weight (calculated)
28800.6 Da
IEP (calculated)
8.867
GRAVY (calculated)
-0.812
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKTIAVERP KQRQRKGFWS PEEDEKLRSF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI NYLRPGLKRD MINAEEEEII LTFHSSLGNK WSRIAKFLPG
101: RTDNEIKNYW HSHLKKKWLK SQKLQHATSI STSSESLVAC GRRNPQTLIS LPEKTSSSPS QESNDNNNNY SCSSGPEIAR LFFSEWFTSS DPYFDHSSNL
201: TDSNHIQTPN IQGPVSDYEE SGDVNQFYYN EMVMMSNSNW TLNDVVFGSK
101: RTDNEIKNYW HSHLKKKWLK SQKLQHATSI STSSESLVAC GRRNPQTLIS LPEKTSSSPS QESNDNNNNY SCSSGPEIAR LFFSEWFTSS DPYFDHSSNL
201: TDSNHIQTPN IQGPVSDYEE SGDVNQFYYN EMVMMSNSNW TLNDVVFGSK
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.