Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG31183 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | KXG31183 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051267_P001 | Maize | nucleus | 67.87 | 74.46 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 69.84 | 74.22 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 69.84 | 72.2 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 69.84 | 72.2 |
| Solyc01g009650.1.1 | Tomato | nucleus | 20.33 | 68.13 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 65.9 | 65.26 |
| EES11177 | Sorghum | nucleus | 58.36 | 59.73 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 42.62 | 58.3 |
| Bra013900.1-P | Field mustard | nucleus | 28.85 | 40.93 |
| EES06150 | Sorghum | nucleus | 39.02 | 39.8 |
| KRH35334 | Soybean | nucleus | 34.1 | 38.52 |
| PGSC0003DMT400037080 | Potato | nucleus | 34.75 | 38.13 |
| CDY32589 | Canola | nucleus | 31.15 | 37.85 |
| KRH09018 | Soybean | nucleus | 36.07 | 37.8 |
| CDY64708 | Canola | nucleus | 31.48 | 37.21 |
| Bra018027.1-P | Field mustard | nucleus | 31.48 | 37.21 |
| KRH38485 | Soybean | nucleus | 35.08 | 36.77 |
| Solyc03g025870.2.1 | Tomato | nucleus | 33.44 | 36.56 |
| CDY50197 | Canola | nucleus | 29.84 | 36.4 |
| CDY38910 | Canola | nucleus | 31.8 | 36.33 |
| Bra029129.1-P | Field mustard | nucleus | 31.8 | 36.33 |
| AT5G52260.1 | Thale cress | nucleus | 31.8 | 36.19 |
| CDX94440 | Canola | nucleus | 29.84 | 35.41 |
| CDY05881 | Canola | nucleus | 29.51 | 34.88 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 33.77 | 34.56 |
| CDX89413 | Canola | nucleus | 30.49 | 34.44 |
| CDX92718 | Canola | nucleus | 29.18 | 33.97 |
| AT4G25560.1 | Thale cress | nucleus | 31.15 | 33.57 |
| AT3G48920.1 | Thale cress | nucleus | 28.52 | 33.33 |
| KRG91494 | Soybean | nucleus | 35.08 | 32.13 |
| EER92216 | Sorghum | nucleus | 31.48 | 29.09 |
| EES03490 | Sorghum | nucleus | 29.51 | 28.66 |
| EES18602 | Sorghum | nucleus | 29.18 | 27.64 |
| EES02393 | Sorghum | nucleus | 24.92 | 27.14 |
| EES03504 | Sorghum | nucleus | 27.21 | 26.02 |
| OQU86237 | Sorghum | nucleus | 22.62 | 25.65 |
| EES03100 | Sorghum | nucleus | 28.2 | 25.22 |
| EES07893 | Sorghum | nucleus | 19.67 | 23.72 |
| EES13346 | Sorghum | nucleus | 27.21 | 23.51 |
| EER97608 | Sorghum | nucleus | 29.18 | 23.36 |
| EER97244 | Sorghum | nucleus | 29.18 | 23.18 |
| EES02806 | Sorghum | nucleus | 30.49 | 21.78 |
| OQU77376 | Sorghum | nucleus | 30.49 | 21.63 |
| Bra019154.1-P | Field mustard | nucleus | 30.16 | 19.96 |
| EES17106 | Sorghum | nucleus | 26.23 | 19.14 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:8078889 | UniProt:C5XSP8 | EnsemblPlants:EES07547 | ProteinID:EES07547 |
| ProteinID:EES07547.1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF748 | InterPro:SANT/Myb | SMART:SM00717 |
| EnsemblPlantsGene:SORBI_3004G303600 | SUPFAM:SSF46689 | UniParc:UPI0001A860D9 | RefSeq:XP_002454571.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:-:64253228..64256534
Molecular Weight (calculated)
32356.3 Da
IEP (calculated)
5.537
GRAVY (calculated)
-0.636
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKACDKPK PNYRKGLWSP EEDQKLRDYI LLHGHGCWSA LPAKAGLHRN GKSCRLRWIN YLRPGLKHGT FSPEEEETVM SLHATLGNKW SRIARHLPGR
101: TDNEVKNHWN SYLKKRVEGK EGRPSTPAPA AATDSGTDSD DSHCVKPGDG GAAQEAPADS GSSEPRESSS ADSSCLTDPP AACRPHALVA APKVMFADWL
201: DTDYYMGCGG GGGGGGPPPA VAAPGLGAAA AAGVDRDQQH QVMSQGSVQQ VDGPSGVDVS SLHGFGDSGA SCWEFQENFD DGIDDQLQTA GFCDLLSMSD
301: YFGLN
101: TDNEVKNHWN SYLKKRVEGK EGRPSTPAPA AATDSGTDSD DSHCVKPGDG GAAQEAPADS GSSEPRESSS ADSSCLTDPP AACRPHALVA APKVMFADWL
201: DTDYYMGCGG GGGGGGPPPA VAAPGLGAAA AAGVDRDQQH QVMSQGSVQQ VDGPSGVDVS SLHGFGDSGA SCWEFQENFD DGIDDQLQTA GFCDLLSMSD
301: YFGLN
001: MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY LRPGLKRGSF SEEEEETILT LHSSLGNKWS RIAKYLPGRT
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
Arabidopsis Description
AtMYB19MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.