CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038878_P001	Maize	nucleus	83.54	83.54
Os05t0543600-01	Rice	nucleus	76.09	78.53
TraesCS1A01G366100.1	Wheat	nucleus	68.63	75.68
TraesCS1B01G383700.1	Wheat	nucleus	68.32	75.09
TraesCS1D01G371800.1	Wheat	nucleus	67.39	74.83
TraesCS1D01G371700.1	Wheat	nucleus	68.01	74.74
TraesCS1D01G371900.1	Wheat	nucleus	64.91	74.38
TraesCS1B01G383800.1	Wheat	nucleus	65.22	72.92
TraesCS1A01G365900.1	Wheat	nucleus	66.15	71.72
TraesCS1A01G366300.1	Wheat	nucleus	64.29	71.63
TraesCS1D01G371400.1	Wheat	nucleus	67.08	71.29
TraesCS1A01G366200.1	Wheat	nucleus	65.22	70.95
TraesCS1B01G383600.1	Wheat	nucleus	67.08	70.82
TraesCS1D01G371500.1	Wheat	nucleus	65.53	70.81
TraesCS1B01G383900.1	Wheat	nucleus	63.35	70.59
TraesCS1A01G366000.1	Wheat	nucleus	60.87	70.0
EES03490	Sorghum	nucleus	65.53	67.2
HORVU1Hr1G079040.4	Barley	nucleus, plastid	63.04	57.67
EES03100	Sorghum	nucleus	42.55	40.18
PGSC0003DMT400069644	Potato	nucleus	38.2	39.05
Solyc06g071690.2.1	Tomato	nucleus	38.51	38.63
GSMUA_AchrUn_...	Banana	plasma membrane	36.34	37.74
EER92216	Sorghum	nucleus	38.51	37.58
PGSC0003DMT400046645	Potato	nucleus	37.89	37.54
Solyc03g112390.2.1	Tomato	nucleus	37.89	37.54
KRH63612	Soybean	nucleus	41.61	37.33
VIT_17s0000g09080.t01	Wine grape	nucleus	41.93	37.19
EES02393	Sorghum	nucleus	31.99	36.79
KRH57123	Soybean	nucleus	41.93	36.49
KRH54334	Soybean	nucleus	40.99	36.26
KRH03235	Soybean	nucleus	40.06	35.64
EES07893	Sorghum	nucleus	27.02	34.39
OQU86237	Sorghum	nucleus	27.02	32.34
EES03504	Sorghum	nucleus	31.99	32.29
EER97608	Sorghum	nucleus	38.2	32.28
EES11177	Sorghum	nucleus	29.19	31.54
EES06150	Sorghum	nucleus	28.88	31.1
EES02806	Sorghum	nucleus	40.99	30.91
OQU77376	Sorghum	nucleus	40.99	30.7
EES07547	Sorghum	nucleus	27.64	29.18
EES13346	Sorghum	nucleus	30.75	28.05
EER97244	Sorghum	nucleus	32.61	27.34
EES17106	Sorghum	nucleus	32.92	25.36

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8069000	UniProt:C5YUX1	EnsemblPlants:EES18602	ProteinID:EES18602
ProteinID:EES18602.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF597	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3009G216900	SUPFAM:SSF46689	UniParc:UPI0001A88CE5	RefSeq:XP_002440172.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:56126141..56129138

Molecular Weight (calculated)

34665.1 Da

IEP (calculated)

4.874

GRAVY (calculated)

-0.542

Length

322 amino acids

Sequence
(BLAST)

001: MGRLSCGGGG VQPKLRKGLW SPEEDEKLYN HIIRHGVGCW SSVPKLAGLQ RCGKSCRLRW INYLRPDLKR GSFSQQEEDL IIALHEILGN RWSQIASHLP
101: GRTDNEIKNF WNSCLKKKLR QRGIDPATHK PIAAGAAAEA GTALPDGRDH DRKPGGAADG DGDADGLAQS KQLQPAAAVF DPFPVTDFGF DLGVAALYCG
201: PYDDGKASPD AGFVADYSSV LDVSENLGYG ESSSNSSNWN CGAEMSNAVL DSEVLHWASG AAAAKPEPYT ELEQQQQHSG GYSGGGGQAV DDDDDALEHK
301: FLLPCGGQEQ SLAHFDFNLE YF

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.