CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G244200.1	Wheat	nucleus	62.42	71.03
TraesCS7D01G340300.1	Wheat	nucleus	61.21	70.38
HORVU7Hr1G082020.1	Barley	nucleus	62.42	58.86
Os03t0371800-00	Rice	nucleus	66.67	55.28
EER97608	Sorghum	nucleus	55.45	48.03
EES18602	Sorghum	nucleus	37.58	38.51
EES03490	Sorghum	nucleus	35.76	37.58
EES02393	Sorghum	nucleus	31.21	36.79
EES03100	Sorghum	nucleus	37.88	36.66
EES07893	Sorghum	nucleus	25.76	33.6
EES07547	Sorghum	nucleus	29.09	31.48
EES11177	Sorghum	nucleus	28.18	31.21
OQU86237	Sorghum	nucleus	25.15	30.86
EES03504	Sorghum	nucleus	29.7	30.72
EES02806	Sorghum	nucleus	39.7	30.68
OQU77376	Sorghum	nucleus	39.39	30.23
EES06150	Sorghum	nucleus	26.67	29.43
EER97244	Sorghum	nucleus	31.82	27.34
EES13346	Sorghum	nucleus	27.27	25.5
EES17106	Sorghum	nucleus	28.79	22.73

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8080767	UniProt:C5WYP1	EnsemblPlants:EER92216	ProteinID:EER92216
ProteinID:EER92216.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF601	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3001G358900	SUPFAM:SSF46689	UniParc:UPI0001A821E3	RefSeq:XP_002465218.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:64882026..64883966

Molecular Weight (calculated)

35769.2 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.340

Length

330 amino acids

Sequence
(BLAST)

001: MAKQSCCHKK KLRRGLWSPE EDEKLMNHIA QYGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGTF SQEEEDLIIH LHSLLGNKWS QIAAQLPGRT
101: DNEVKNFWNS YIKKRLRERG IDPATHQPLA EPAAATAPAS TTTVSRRAVF GDVDLIPTTT PIQAPSSFEG PMLDGVTKLP AVDMDWPVPG DGVPSSSLPR
201: PCYLQGGCFD IGALQQQQHC GSIVPAPVVP SASSSSTLTS MAEAEHCNTN ITGGSLPWLE LGANAVADAG HVDSCYAGAL DELRWSEYFD SAFQAAASQQ
301: GALQAAGQCV YGGKDDVPVH FDVHGLSNWC

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.