CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039700_P001	Maize	nucleus	74.29	87.03
OQU86237	Sorghum	nucleus	36.07	37.55
EES07893	Sorghum	nucleus	31.79	35.18
EES03100	Sorghum	nucleus	39.64	32.55
EES03490	Sorghum	nucleus	36.07	32.17
EES18602	Sorghum	nucleus	36.79	31.99
EER92216	Sorghum	nucleus	36.79	31.21
PGSC0003DMT400069644	Potato	nucleus	32.5	28.89
Solyc06g071690.2.1	Tomato	nucleus	32.86	28.66
Solyc03g112390.2.1	Tomato	nucleus	32.5	28.0
PGSC0003DMT400046645	Potato	nucleus	32.5	28.0
KRH63612	Soybean	nucleus	35.36	27.58
EES11177	Sorghum	nucleus	29.29	27.52
EES03504	Sorghum	nucleus	31.07	27.27
KRH54334	Soybean	nucleus	35.36	27.2
EER97608	Sorghum	nucleus	36.43	26.77
KRH57123	Soybean	nucleus	35.36	26.76
VIT_17s0000g09080.t01	Wine grape	nucleus	34.29	26.45
EES06150	Sorghum	nucleus	27.86	26.09
KRH03235	Soybean	nucleus	33.21	25.69
EES07547	Sorghum	nucleus	27.14	24.92
EES02806	Sorghum	nucleus	36.79	24.12
EES13346	Sorghum	nucleus	29.64	23.51
OQU77376	Sorghum	nucleus	36.07	23.49
EER97244	Sorghum	nucleus	31.07	22.66
EES17106	Sorghum	nucleus	30.0	20.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8078491	UniProt:C5XNH0	EnsemblPlants:EES02393	ProteinID:EES02393
ProteinID:EES02393.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF466	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3003G053200	SUPFAM:SSF46689	UniParc:UPI0001A850B5	RefSeq:XP_002457273.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:4829807..4831415

Molecular Weight (calculated)

30208.9 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.491

Length

280 amino acids

Sequence
(BLAST)

001: MGRVHPCCSE EKKVRKGLWS PEEDERLASH IARFGVSCWS SIPELAGLQR CGKSCRLRWM NYLRPDLKRG RFSQHEEDLI ISLHKALGNS WSQIAARLPG
101: RSDNEIKNFW NARLRKKLRQ KEASTSSTAV SKEPAARRNQ PNANAEVDDR SKPAPSVFTP FVPDHVAAAA GASGASSCDD SSAAGSFFAD PAAATCAAVH
201: LADGAADDRN AAAAESGVTP TPSLTTSTSA CTDDARGSCD DGFFRAMVDD PSFLFGDFYL DGDAGHHGQI MSFWEGHAFS

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.