Factsheet for Zm00001d039700_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02393	Sorghum	nucleus	87.03	74.29
Zm00001d008206_P001	Maize	nucleus	21.34	69.86
Zm00001d023931_P001	Maize	nucleus	23.01	56.7
Zm00001d024784_P001	Maize	nucleus	33.47	31.25
Zm00001d008695_P001	Maize	nucleus	32.22	27.8
Zm00001d043729_P001	Maize	nucleus	25.52	26.64
Zm00001d040527_P001	Maize	nucleus	30.96	26.33
Zm00001d009435_P001	Maize	nucleus	27.62	26.09
Zm00001d011669_P001	Maize	nucleus	25.94	25.83
Zm00001d038878_P001	Maize	nucleus	30.54	22.67
Solyc06g071690.2.1	Tomato	nucleus	30.13	22.43
PGSC0003DMT400069644	Potato	nucleus	29.29	22.22
Zm00001d022259_P002	Maize	nucleus	32.22	22.06
Zm00001d051267_P001	Maize	nucleus	25.52	21.94
Solyc03g112390.2.1	Tomato	nucleus	29.29	21.54
PGSC0003DMT400046645	Potato	nucleus	29.29	21.54
Zm00001d021537_P001	Maize	nucleus	26.78	21.12
KRH57123	Soybean	nucleus	32.64	21.08
KRH03235	Soybean	nucleus	31.8	20.99
KRH63612	Soybean	nucleus	31.38	20.89
VIT_17s0000g09080.t01	Wine grape	nucleus	31.38	20.66
KRH54334	Soybean	nucleus	31.38	20.6
Zm00001d017383_P001	Maize	nucleus	24.27	19.93
Zm00001d014989_P001	Maize	nucleus	25.52	19.81
Zm00001d010907_P001	Maize	nucleus	32.22	18.08
Zm00001d024630_P002	Maize	nucleus	27.2	17.96
Zm00001d005055_P001	Maize	nucleus	15.48	16.3

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:A0A1D6MKN6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:IPR017930	InterPro:Myb-like_dom	InterPro:Myb_dom
ProteinID:ONM29775.1	PFAM:PF00249	PFscan:PS50090	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF466
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0008438C53	EnsemblPlantsGene:Zm00001d039700	EnsemblPlants:Zm00001d039700_P001
EnsemblPlants:Zm00001d039700_T001	SEG:seg	:	:	:	:

Description

MYB-transcription factor 20Transcription factor MYB86

Coordinates

chr3:-:12503835..12504977

Molecular Weight (calculated)

25784.9 Da

IEP (calculated)

6.298

GRAVY (calculated)

-0.446

Length

239 amino acids

Sequence
(BLAST)

001: MGRVHPCCSE EKKVRKGLWS PEEDERLASH IARFGVSCWS SIPELAGLQR CGKSCRLRWM NYLRPDLKRG RFSQQEEDLI IALHKALGNR RNRPNSTENG
101: DDRIKPAPPP VFTPYPFVPP SPRDHVAAAA SGASSCDDYS SAAGSFVADP AAAAACAAVH VGYATDRSAA AAESGVTPTP PSMTTSTSAC TDDARGSCDD
201: GFLRAMVDDP SFLFGDFYLD SDGGHHGQIM SFWESHAFS

Best Arabidopsis Sequence Match ( AT5G26660.1 )
(BLAST)

001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL

Arabidopsis Description

MYB86Transcription factor MYB86 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPH6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.