Factsheet for Zm00001d021537_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d011238_P001
Zm00001d014756_P006
Zm00001d023732_P002
Zm00001d028948_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12720.1	Zm00001d014756_P006	AT1G15570.1	21798944
AT3G12720.1	Zm00001d023732_P002	AT1G15570.1	21798944
AT3G12720.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT3G12720.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT3G12720.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT3G12720.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT3G12720.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT3G12720.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT3G12720.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT3G12720.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT3G12720.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT3G12720.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT3G12720.1	Zm00001d011238_P001	AT3G28715.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008206_P001	Maize	nucleus	17.49	72.6
EER97244	Sorghum	nucleus	88.78	70.05
Zm00001d023931_P001	Maize	nucleus	17.82	55.67
TraesCS2D01G234000.1	Wheat	nucleus	66.34	52.62
Os07t0497500-00	Rice	nucleus	68.65	52.0
TraesCS2A01G230400.1	Wheat	nucleus	64.69	51.72
TraesCS2B01G252000.1	Wheat	nucleus	64.36	51.05
HORVU2Hr1G051030.3	Barley	nucleus	63.04	50.0
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	62.05	49.21
GSMUA_Achr9P11190_001	Banana	nucleus	45.54	42.2
GSMUA_Achr9P25110_001	Banana	nucleus	38.94	37.46
GSMUA_Achr8P03510_001	Banana	nucleus	38.61	36.68
Bra034738.1-P	Field mustard	nucleus	31.35	32.31
VIT_19s0085g00940.t01	Wine grape	nucleus	35.64	32.05
CDY42172	Canola	nucleus	31.02	31.97
CDY42171	Canola	nucleus	31.02	31.97
CDY08409	Canola	nucleus	31.02	31.97
CDY43404	Canola	nucleus	30.03	30.95
Bra039339.1-P	Field mustard	nucleus	30.03	30.95
PGSC0003DMT400018897	Potato	nucleus	32.67	30.94
Solyc02g082040.2.1	Tomato	nucleus	33.0	30.86
AT3G12720.1	Thale cress	nucleus	31.02	30.62
Zm00001d024784_P001	Maize	nucleus	24.75	29.3
KRH43663	Soybean	nucleus	31.35	29.05
VIT_01s0010g00410.t01	Wine grape	nucleus	32.01	28.12
Solyc10g005240.2.1	Tomato	nucleus	32.01	28.12
KRH13791	Soybean	nucleus	29.7	27.69
Zm00001d040527_P001	Maize	nucleus	25.41	27.4
Zm00001d039700_P001	Maize	nucleus	21.12	26.78
Zm00001d043729_P001	Maize	nucleus	19.8	26.2
Zm00001d011669_P001	Maize	nucleus	19.8	25.0
Zm00001d009435_P001	Maize	nucleus	19.8	23.72
Zm00001d038878_P001	Maize	nucleus	24.75	23.29
Zm00001d051267_P001	Maize	nucleus	20.46	22.3
Zm00001d024630_P002	Maize	nucleus	26.4	22.1
Zm00001d017383_P001	Maize	nucleus	21.12	21.99
Zm00001d014989_P001	Maize	nucleus	21.78	21.43
Zm00001d022259_P002	Maize	nucleus	24.09	20.92
Zm00001d008695_P001	Maize	nucleus	17.82	19.49
Zm00001d010907_P001	Maize	nucleus	27.39	19.48
Zm00001d005055_P001	Maize	nucleus	11.88	15.86

Protein Annotations

EnsemblPlants:Zm00001d021537_P001	EnsemblPlants:Zm00001d021537_T001	EnsemblPlantsGene:Zm00001d021537	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF702	PFAM:PF00249	PFscan:PS51294	ProteinID:ONM57418.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000843D760	UniProt:A0A1D6IBW9	MapMan:15.5.2.1	:

Description

MYB-transcription factor 14R2R3MYB-domain protein

Coordinates

chr7:+:155328673..155330151

Molecular Weight (calculated)

32228.3 Da

IEP (calculated)

6.335

GRAVY (calculated)

-0.348

Length

303 amino acids

Sequence
(BLAST)

001: MGHHCCSKQK VKRGLWSPEE DEKLVKYITA HGHSCWSAVP KHAGLQRCGK SCRLRWINYL RPDLKRGTFS DHEERTIIDV HRILGNRSPT KAAAYGTVTA
101: TPPPETMAPA TYDVPNNYPD GMLMRHDQAA TAAAIPGYPY HPGNGGGVLM SFRDQNAGLQ TSVDFVNGSS SSSSMDHAAG MPNGNGFSQQ GMGAAFMDVT
201: AGMWSTAAVD SGMCAGMEVA QPPPPPPQQP LPPQGLVQGE VLVGRQTVMN GGGAVADKGM DMMDVSSVYG GAGAMAFDLE LMESCALFCG STGNTMEQLQ
301: WDC

Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)

001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF

Arabidopsis Description

ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.