Factsheet for Os07t0497500-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0587000-01
Os01t0810300-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0502300-01
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12720.1	Os12t0502300-01	AT1G15570.1	21798944
AT3G12720.1	Os01t0267900-01	AT2G41100.1	17360592
AT3G12720.1	Os01t0279300-01	AT2G41100.1	17360592
AT3G12720.1	Os01t0810300-01	AT2G41100.1	17360592
AT3G12720.1	Os03t0319300-01	AT2G41100.1	17360592
AT3G12720.1	Os05t0491000-01	AT2G41100.1	17360592
AT3G12720.1	Os05t0491100-01	AT2G41100.1	17360592
AT3G12720.1	Os07t0687200-02	AT2G41100.1	17360592
AT3G12720.1	Os12t0603800-00	AT2G41100.1	17360592
AT3G12720.1	Os01t0587000-01	AT3G28715.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97244	Sorghum	nucleus	69.5	72.4
TraesCS2D01G234000.1	Wheat	nucleus	67.25	70.42
TraesCS2A01G230400.1	Wheat	nucleus	65.25	68.87
Zm00001d021537_P001	Maize	nucleus	52.0	68.65
TraesCS2B01G252000.1	Wheat	nucleus	65.25	68.32
HORVU2Hr1G051030.3	Barley	nucleus	64.75	67.8
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	64.0	67.02
GSMUA_Achr9P11190_001	Banana	nucleus	48.0	58.72
GSMUA_Achr9P25110_001	Banana	nucleus	43.0	54.6
GSMUA_Achr8P03510_001	Banana	nucleus	43.25	54.23
VIT_19s0085g00940.t01	Wine grape	nucleus	38.25	45.4
PGSC0003DMT400018897	Potato	nucleus	36.0	45.0
Solyc02g082040.2.1	Tomato	nucleus	36.25	44.75
Solyc10g005240.2.1	Tomato	nucleus	38.0	44.06
Bra034738.1-P	Field mustard	nucleus	32.25	43.88
CDY08409	Canola	nucleus	32.25	43.88
CDY42171	Canola	nucleus	32.25	43.88
CDY42172	Canola	nucleus	32.25	43.88
Bra039339.1-P	Field mustard	nucleus	31.75	43.2
CDY43404	Canola	nucleus	31.75	43.2
VIT_01s0010g00410.t01	Wine grape	nucleus	37.25	43.19
AT3G12720.1	Thale cress	nucleus	33.0	43.0
KRH43663	Soybean	nucleus	33.25	40.67
KRH13791	Soybean	nucleus	33.0	40.62
Os01t0709000-01	Rice	nucleus	28.75	37.46
Os05t0543600-01	Rice	nucleus	26.25	33.65
Os01t0702700-01	Rice	nucleus	25.0	33.22
Os04t0532800-01	Rice	nucleus	22.25	32.6
Os03t0371800-00	Rice	nucleus	27.25	27.39
Os08t0151300-01	Rice	nucleus	23.25	25.91
Os05t0140100-01	Rice	nucleus	27.5	25.76
Os01t0285300-01	Rice	nucleus	27.5	25.7
Os07t0634900-00	Rice	plastid	13.75	15.24
Os12t0515300-00	Rice	nucleus	10.0	12.78

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4343302	ProteinID:BAC07102.1	ProteinID:BAD30445.1	ProteinID:BAF21622.1
ProteinID:BAT01616.1	ProteinID:EAZ39900.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	EnsemblPlantsGene:Os07g0497500	EnsemblPlants:Os07t0497500-00	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF702	UniProt:Q7F0R0	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00000A64BB
RefSeq:XP_015645809.1	SEG:seg	:	:	:	:

Description

Similar to MYB transcription factor. (Os07t0497500-00)

Coordinates

chr7:-:18658755..18660353

Molecular Weight (calculated)

41658.3 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.237

Length

400 amino acids

Sequence
(BLAST)

001: MGHHCCSKQK VKRGLWSPEE DEKLVRYISE HGHSCWSSVP KHAGLQRCGK SCRLRWINYL RPDLKRGTFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLIAQGL DPKTHNLLPA SKTLLHGGGG GGAANPSGNG LAQFQSNNGA AAAGTTPFTI SSPAKAAAYD VAPPALYDVV LPANPAGGML
201: MAHDHHHHHQ VAAAAAPVGY PYADHGGNGG GVLMSFRDQN AGVHGAASMD FMNGSSSSSS MEQLGGGGGM SSNGNGSFSA SMAAFMDEEA AMWATAVAPP
301: GMGGLAGMDQ VAQQQQQQQV LVQDAAVGVA PTTLMMHGGG AATAGAMVVD KSVEMVDVSS AVYGGATATA FDLDLMVESC GMFCGGGGAG NAMEQLQWDC

Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)

001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF

Arabidopsis Description

ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.