Factsheet for Os01t0587000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

vacuole: 18557835
nucleus: 19621931
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0828566-01
Os03t0422702-00
Os06t0729900-00
Os10t0485500-01
Os12t0548300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28715.1	Os02t0828566-01	AT5G08330.1	21798944
AT3G28715.1	Os03t0422702-00	AT5G08330.1	21798944
AT3G28715.1	Os06t0729900-00	AT5G23130.1	21798944
AT3G28715.1	Os10t0485500-01	AT5G23130.1	21798944
AT3G28715.1	Os12t0548300-01	AT5G63310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03178	Sorghum	cytosol	97.15	97.15
TraesCS3A01G210400.2	Wheat	cytosol, golgi	96.01	96.01
TraesCS3D01G213200.1	Wheat	cytosol	95.73	95.73
TraesCS3B01G241000.1	Wheat	cytosol	95.73	95.73
HORVU3Hr1G050990.2	Barley	vacuole	95.16	95.16
GSMUA_Achr1P11740_001	Banana	cytosol	81.2	93.44
GSMUA_Achr6P35890_001	Banana	cytosol	80.63	92.79
KRH01133	Soybean	cytosol	91.74	91.74
KRH40128	Soybean	endoplasmic reticulum	91.74	91.74
PGSC0003DMT400072522	Potato	cytosol, mitochondrion	91.45	91.45
Solyc10g081530.1.1	Tomato	nucleus, plastid	91.45	91.45
VIT_14s0108g00080.t01	Wine grape	cytosol, extracellular	91.17	91.17
AT3G28710.1	Thale cress	cytosol	89.74	89.74
AT3G28715.1	Thale cress	cytosol	89.46	89.46
CDX95344	Canola	cytosol	19.94	76.09
Zm00001d011238_P001	Maize	cytosol	47.01	64.2
CDY17733	Canola	mitochondrion	12.54	32.35

Protein Annotations

Gene3D:1.10.132.50	Gene3D:1.20.1690.10	MapMan:24.1.1.1.3	EntrezGene:4327660	EMBL:AK067605	InterPro:ATPase_V0-cplx_csu/dsu
InterPro:ATPase_V0-cplx_dsu	InterPro:ATPase_su_C-like	ProteinID:BAB89911.1	ProteinID:BAF05343.1	ProteinID:BAS72912.1	ProteinID:EEE54888.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005764	GO:GO:0005765	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811
GO:GO:0007034	GO:GO:0007035	GO:GO:0008150	GO:GO:0008553	GO:GO:0009987	GO:GO:0015078
GO:GO:0015991	GO:GO:0016020	GO:GO:0016471	GO:GO:0016787	GO:GO:0019725	GO:GO:0033179
GO:GO:0046961	InterPro:IPR035067	EnsemblPlantsGene:Os01g0587000	EnsemblPlants:Os01t0587000-01	PFAM:PF01992	PIRSF:PIRSF018497
PANTHER:PTHR11028	PANTHER:PTHR11028:SF0	UniProt:Q8RU33	SUPFAM:SSF103486	UniParc:UPI00000A20E5	InterPro:V-type_ATPase_suC
RefSeq:XP_015622221.1	:	:	:	:	:

Description

Similar to Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) (DVA41). (Os01t0587000-01)

Coordinates

chr1:-:22855514..22859716

Molecular Weight (calculated)

40786.9 Da

IEP (calculated)

4.560

GRAVY (calculated)

-0.175

Length

351 amino acids

Sequence
(BLAST)

001: MYGWEMLSFN IHDGFLEAIV RGNRSGLLTA ADYNNLCQCE NLDDVKMHLT ATEYGPYLQN EPSPLHTTTI VEKCTLKLVD EYKHMMCQAT EPLSTFLQYI
101: TYGHMIDNVV LIVTGTLHER DVNELLEKCH PLGMFDSIAS LAVAQNMREL YRLVLVDTPL APYFSECITS EDLDDMNIEI MRNTLYKAYL EDFYKFCEKL
201: GGATAEIMCD LLSFEADRRA VNITINSIGT ELTRDDRRKL YSNFGLLYPY GHEELAVCED VDQVRGVMEK YPPYQAIFAK ISYGESQMLD KAFYEEEVRR
301: LCLSFEQQFH YAVFFAYIRL REQEIRNLMW ISECVAQNQK NRVHDSVVFI F

Best Arabidopsis Sequence Match ( AT3G28715.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYNFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D2V-type proton ATPase subunit d2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.