Factsheet for Os12t0548300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 21897044

plastid: 17189339
plastid: 21433289
nucleus: 24133045
plasma membrane: 27800704
plastid: 27992503

gfp PMID: 21897044 doi

A Kihara, W Saburi, S Wakuta, MH Kim, S Hamada, H Ito, R Imai, H Matsui

Laboratory of Biochemistry, Research Faculty of Agriculture, Hokkaido University.

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0285800-01
Os03t0586600-01
Os06t0154500-01
Os06t0606000-01
Os07t0463100-01
Os08t0426000-00
Os12t0548300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	Os03t0586600-01	AT2G04630.1	21798944
AT5G63310.1	Os07t0463100-01	AT2G04630.1	21798944
AT5G63310.1	Os08t0426000-00	AT2G04630.1	21798944
AT5G63310.1	Os06t0154500-01	AT2G43790.1	12506203
AT5G63310.1	Os03t0285800-01	AT3G45640.1	12506203
AT5G63310.1	Os06t0606000-01	AT5G35410.1	17785451
AT5G63310.1	Os12t0548300-01	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G104600.2	Wheat	plastid	80.45	80.45
TraesCS5A01G092400.1	Wheat	plastid	80.0	79.64
EES16135	Sorghum	plastid	80.0	79.28
HORVU5Hr1G024250.1	Barley	mitochondrion	81.82	72.58
Zm00001d023833_P001	Maize	plastid	77.73	72.15
PGSC0003DMT400039453	Potato	cytosol	53.18	71.78
TraesCS5B01G098300.2	Wheat	cytosol	54.55	69.77
Os07t0492000-01	Rice	extracellular	45.91	67.79
Os10t0563700-01	Rice	extracellular	45.0	65.56
VIT_17s0000g10280.t01	Wine grape	plastid	66.82	63.91
GSMUA_AchrUn_...	Banana	plastid	67.27	63.25
Solyc06g071960.2.1	Tomato	plastid	64.09	62.95
PGSC0003DMT400069352	Potato	mitochondrion	63.64	62.5
KRH57193	Soybean	plastid	62.27	60.89
KRH03909	Soybean	plastid	61.82	59.91
Solyc03g110960.2.1	Tomato	plastid	62.73	59.23
CDY41513	Canola	plastid	62.27	59.05
Bra038621.1-P	Field mustard	plastid	61.82	58.62
AT5G63310.1	Thale cress	plastid	61.36	58.44
CDX84395	Canola	plastid	61.36	58.19
KRH16591	Soybean	mitochondrion	51.36	57.95
CDY48138	Canola	plastid	59.55	56.96
KRG89746	Soybean	plastid	50.91	50.0
Os05t0595400-01	Rice	plastid	41.36	38.08
Os02t0565100-01	Rice	endoplasmic reticulum	23.18	28.18

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	EntrezGene:4352460	MapMan:6.3.2.4
ProteinID:ABG22043.1	EMBL:AK070054	ProteinID:BAF29990.1	ProteinID:BAT17546.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_AS	EnsemblPlantsGene:Os12g0548300	EnsemblPlants:Os12t0548300-01	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469
PANTHER:PTHR11349	PANTHER:PTHR11349:SF44	UniProt:Q0IMS5	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI0000D89E22
RefSeq:XP_015618263.1	SEG:seg	:	:	:	:

Description

NUCLEOSIDE DIPHOSPHATE KINASE 2, Nucleoside diphosphate kinase 2, White stripe leaf 12Nucleoside diphosphate kinase, Regulation of chloroplast development and chlorophyll biosynthesis, Abiotic stress response (ABA and salinity) (Os12t0548300-01);Similar to Nucleoside diphosphate kinase (Fragment). (Os12t0548300-02);Similar to Nucleoside diphosphate kinase (Fragment). (Os12t0548300-03)

Coordinates

chr12:+:22182885..22189574

Molecular Weight (calculated)

23471.4 Da

IEP (calculated)

10.020

GRAVY (calculated)

-0.056

Length

220 amino acids

Sequence
(BLAST)

001: MDAMAVLART SRPAPTLLAA TSPAVSRRPA AVSFAAAASP GSRGRVALSA AWGGRAARGR VSAAGRIVAS SVEQSYIMIK PDGVQRGLVG EIISRFEKKG
101: FVLKGLKLFQ CPKDLAQEHY KDLKEKPFFP GLIEYITSGP VVCMAWEGNG VVASARKLIG ATNPLQAEPG TIRGDLAVQT GRNVVHGSDS PDNGKREIAL
201: WFKEGELCEW ESVLTPWLVE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.