Factsheet for Solyc06g071960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g078380.1.1
Solyc03g110960.2.1
Solyc05g054820.1.1
Solyc06g005170.2.1
Solyc06g071960.2.1
Solyc08g014420.2.1
Solyc09g010500.2.1
Solyc09g018280.1.1
Solyc10g085450.1.1
Solyc11g005270.1.1
Solyc12g009570.1.1
Solyc12g019460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	Solyc09g010500.2.1	AT2G04630.1	21798944
AT5G63310.1	Solyc08g014420.2.1	AT2G43790.1	12506203
AT5G63310.1	Solyc12g019460.1.1	AT2G43790.1	12506203
AT5G63310.1	Solyc06g005170.2.1	AT3G45640.1	12506203
AT5G63310.1	Solyc05g054820.1.1	AT3G55150.1	21798944
AT5G63310.1	Solyc09g018280.1.1	AT5G01820.1	17785451
AT5G63310.1	Solyc10g085450.1.1	AT5G01820.1	17785451
AT5G63310.1	Solyc03g078380.1.1	AT5G13810.1	21798944
AT5G63310.1	Solyc11g005270.1.1	AT5G13810.1	21798944
AT5G63310.1	Solyc12g009570.1.1	AT5G35410.1	17785451
AT5G63310.1	Solyc03g110960.2.1	AT5G63310.1	17785451
AT5G63310.1	Solyc06g071960.2.1	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069352	Potato	mitochondrion	92.86	92.86
Solyc03g110960.2.1	Tomato	plastid	77.68	74.68
VIT_17s0000g10280.t01	Wine grape	plastid	70.54	68.7
KRH57193	Soybean	plastid	67.41	67.11
Bra038621.1-P	Field mustard	plastid	69.2	66.81
CDY41513	Canola	plastid	69.2	66.81
AT5G63310.1	Thale cress	plastid	68.75	66.67
KRH16591	Soybean	mitochondrion	58.04	66.67
KRH03909	Soybean	plastid	67.41	66.52
TraesCS5B01G098300.2	Wheat	cytosol	50.89	66.28
TraesCS5D01G104600.2	Wheat	plastid	64.73	65.91
EES16135	Sorghum	plastid	65.18	65.77
CDX84395	Canola	plastid	67.86	65.52
TraesCS5A01G092400.1	Wheat	plastid	64.29	65.16
GSMUA_AchrUn_...	Banana	plastid	67.41	64.53
CDY48138	Canola	plastid	66.07	64.35
Os12t0548300-01	Rice	plastid	62.95	64.09
Solyc01g089970.2.1	Tomato	extracellular, plastid	41.52	62.84
Zm00001d023833_P001	Maize	plastid	64.29	60.76
KRG89746	Soybean	plastid	58.48	58.48
HORVU5Hr1G024250.1	Barley	mitochondrion	64.73	58.47
Solyc09g055420.1.1	Tomato	cytosol, unclear	28.57	54.7
Solyc06g075470.1.1	Tomato	cytosol	19.2	54.43
Solyc08g082430.2.1	Tomato	plastid	42.86	40.34
Solyc08g008340.2.1	Tomato	plastid	41.07	39.32
Solyc12g049370.1.1	Tomato	endoplasmic reticulum	25.0	32.56

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	InterPro:IPR036850	UniProt:K4C8R8	HAMAP:MF_00451	InterPro:NDK-like_dom
InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469
PANTHER:PTHR11349	PANTHER:PTHR11349:SF44	SMART:SM00562	SUPFAM:SSF54919	EnsemblPlantsGene:Solyc06g071960.2	EnsemblPlants:Solyc06g071960.2.1
UniParc:UPI0002765578	:	:	:	:	:

Description

Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:K4C8R8]

Coordinates

chr6:-:44325762..44328900

Molecular Weight (calculated)

24653.0 Da

IEP (calculated)

9.258

GRAVY (calculated)

-0.075

Length

224 amino acids

Sequence
(BLAST)

001: MEGLTIVGAT PCVSSSLRRI SSKTTCLASR LTPKSVKKHS LAALQPAFYL FSTNVPKRQI RARIFLPHLV ASMEEVEQTY IMIKPDGVQR GLVGEIISRF
101: ERKGFKLTGL KLFQCPKELA EEHYKDLQSK PFFPKLIDYI TSGPVVCMAW EGVGVVASAR KLIGATNPLN AEPGTIRGDL AVQTGRNVVH GSDSPDNGKR
201: EIGLWFNEGE LCAWAAALEP WLVE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.