Factsheet for Solyc12g049370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011148	Potato	endoplasmic reticulum	94.77	94.77
VIT_09s0002g00950.t01	Wine grape	cytosol	59.3	71.33
KRH33600	Soybean	cytosol	31.4	69.23
TraesCS7B01G282400.1	Wheat	cytosol	31.98	66.27
KRH47632	Soybean	cytosol	46.51	66.12
GSMUA_Achr3P05930_001	Banana	endoplasmic reticulum	58.72	58.38
AT1G17410.1	Thale cress	endoplasmic reticulum	59.88	56.91
CDX96770	Canola	endoplasmic reticulum	58.14	56.5
CDY66964	Canola	endoplasmic reticulum	57.56	56.25
TraesCS7D01G376900.1	Wheat	endoplasmic reticulum	58.14	55.56
TraesCS7A01G380500.1	Wheat	endoplasmic reticulum	58.14	55.56
Os02t0565100-01	Rice	endoplasmic reticulum	56.4	53.59
Zm00001d050827_P003	Maize	endoplasmic reticulum	56.98	52.41
HORVU7Hr1G090780.4	Barley	endoplasmic reticulum	30.23	52.0
KRH06204	Soybean	endoplasmic reticulum, extracellular	62.79	50.47
HORVU7Hr1G090750.2	Barley	endoplasmic reticulum, extracellular	40.7	49.65
KXG30465	Sorghum	plastid	56.98	41.18
Solyc09g055420.1.1	Tomato	cytosol, unclear	23.26	34.19
Solyc06g075470.1.1	Tomato	cytosol	15.7	34.18
Solyc01g089970.2.1	Tomato	extracellular, plastid	27.91	32.43
Solyc06g071960.2.1	Tomato	plastid	32.56	25.0
Solyc03g110960.2.1	Tomato	plastid	33.72	24.89
Solyc08g082430.2.1	Tomato	plastid	31.4	22.69
Solyc08g008340.2.1	Tomato	plastid	29.65	21.79

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:50.2.7	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	InterPro:IPR036850	UniProt:K4DFL7	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf
InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349
PANTHER:PTHR11349:SF64	SMART:SM00562	SUPFAM:SSF54919	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc12g049370.1	EnsemblPlants:Solyc12g049370.1.1
UniParc:UPI00027699EF	SEG:seg	:	:	:	:

Description

Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:K4DFL7]

Coordinates

chr12:-:36964671..36969147

Molecular Weight (calculated)

19038.6 Da

IEP (calculated)

6.625

GRAVY (calculated)

-0.201

Length

172 amino acids

Sequence
(BLAST)

001: MLLPFFLLSI LSLPNRCSAD SSTETERTLA IIKPDGVSGN HTNSVKETIL NHGFKITEES LIQLDEDRVK RFYAEHSSRS FFPSLVEYMT SGPVLIMVLE
101: KGNAIADWRA LIGPTDPLKA KVTHPHSVRA ICGLNLQENC VHGSDSPQSA SREISFFFKT TSSGYASKHD EL

Best Arabidopsis Sequence Match ( AT1G17410.1 )
(BLAST)

001: MSGITYQILF LLLLASVSLS PVRCLGYGAS SEERTLAMIK PDGVSGNYTE EIKTIVVEAG FNIVKEMLTQ LDKETASAFY EEHSSRSFFP HLVTYMTSGP
101: VLVMVLEKRN AVSDWRDLIG PTDAEKAKIS HPHSIRALCG KNSQKNCVHG SDSTSSAERE IKFFFKDVVS GDIATQQHDE L

Arabidopsis Description

Nucleoside diphosphate kinase family protein [Source:UniProtKB/TrEMBL;Acc:F4I7J3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.