Factsheet for Solyc08g008340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075470.1.1	Tomato	cytosol	33.76	100.0
PGSC0003DMT400014828	Potato	mitochondrion	95.73	96.55
TraesCS1D01G452300.1	Wheat	cytosol	62.39	90.12
Solyc08g082430.2.1	Tomato	plastid	88.46	86.97
VIT_02s0025g01500.t01	Wine grape	plastid	82.48	82.13
AT4G23900.1	Thale cress	mitochondrion	80.34	79.32
Bra033163.1-P	Field mustard	plastid	79.49	79.15
CDY25267	Canola	plastid	79.49	79.15
CDX94238	Canola	plastid	79.06	78.72
Bra035260.1-P	Field mustard	mitochondrion	78.63	77.97
CDX86826	Canola	mitochondrion	78.63	77.97
AT4G11010.1	Thale cress	mitochondrion, plastid	79.06	77.73
CDY47613	Canola	mitochondrion	78.21	77.22
KRH41307	Soybean	mitochondrion	77.78	77.12
Bra013742.1-P	Field mustard	mitochondrion	77.78	76.79
KRH60038	Soybean	mitochondrion	76.92	76.6
CDY03508	Canola	mitochondrion, plastid	76.5	75.53
GSMUA_Achr1P11560_001	Banana	mitochondrion	74.36	73.42
Os05t0595400-01	Rice	plastid	74.79	73.22
GSMUA_Achr4P01100_001	Banana	mitochondrion	74.36	73.11
Zm00001d039221_P001	Maize	mitochondrion	70.94	70.04
Zm00001d009774_P001	Maize	mitochondrion	70.94	69.75
KXG22725	Sorghum	mitochondrion	71.79	69.14
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	70.94	68.88
HORVU1Hr1G095400.2	Barley	plastid	70.94	66.94
TraesCS1B01G478800.1	Wheat	plastid	70.51	66.53
Zm00001d004713_P001	Maize	endoplasmic reticulum	52.14	63.87
Solyc01g089970.2.1	Tomato	extracellular, plastid	37.18	58.78
Solyc09g055420.1.1	Tomato	cytosol, unclear	27.78	55.56
Zm00001d024444_P001	Maize	plastid	57.27	46.37
Solyc06g071960.2.1	Tomato	plastid	39.32	41.07
Solyc03g110960.2.1	Tomato	plastid	40.17	40.34
AT4G23895.3	Thale cress	cytosol	79.49	39.83
Solyc12g049370.1.1	Tomato	endoplasmic reticulum	21.79	29.65
CDY40857	Canola	endoplasmic reticulum, golgi	40.17	28.06

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	InterPro:IPR036850	UniProt:K4CIW8	HAMAP:MF_00451	InterPro:NDK-like_dom
InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469
PANTHER:PTHR11349	PANTHER:PTHR11349:SF91	SMART:SM00562	SUPFAM:SSF54919	EnsemblPlantsGene:Solyc08g008340.2	EnsemblPlants:Solyc08g008340.2.1
UniParc:UPI000276AC71	SEG:seg	:	:	:	:

Description

Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:K4CIW8]

Coordinates

chr8:+:2767026..2769333

Molecular Weight (calculated)

25478.6 Da

IEP (calculated)

10.244

GRAVY (calculated)

-0.180

Length

234 amino acids

Sequence
(BLAST)

001: MNSQICRSAS RATKSLFTSS SRAFSGGRAA AAAATVSLRG VVPSLATYGR TKSRNSSTGW ISGILALPAA AYMLQEQEAH AAEMERTFIA IKPDGVQRGL
101: ISEILSRFER KGFKLVAIKI VVPSKDFAQK HYHDLKERPF FNGLCGFLSS GPVVAMVWEG EGVIKYGRKL IGATDPQKSE PGTIRGDLAV VVGRNIIHGS
201: DGPETAKDEI KLWFKPEELV RYTSNAEKWI YGVN

Best Arabidopsis Sequence Match ( AT4G23900.1 )
(BLAST)

001: MSSQICRSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG RKLIGATDPQ KSEPGTIRGD LAVVVGRNII
201: HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN

Arabidopsis Description

NDK4Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LAH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.