Factsheet for Zm00001d009774_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G452300.1	Wheat	cytosol	64.71	95.06
Solyc06g075470.1.1	Tomato	cytosol	31.09	93.67
KXG22725	Sorghum	mitochondrion	94.54	92.59
Zm00001d039221_P001	Maize	mitochondrion	89.5	89.87
Os05t0595400-01	Rice	plastid	81.51	81.17
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	80.25	79.25
HORVU1Hr1G095400.2	Barley	plastid	80.67	77.42
TraesCS1B01G478800.1	Wheat	plastid	80.25	77.02
VIT_02s0025g01500.t01	Wine grape	plastid	71.01	71.91
PGSC0003DMT400014828	Potato	mitochondrion	69.33	71.12
GSMUA_Achr4P01100_001	Banana	mitochondrion	71.01	71.01
Solyc08g008340.2.1	Tomato	plastid	69.75	70.94
KRH60038	Soybean	mitochondrion	69.75	70.64
GSMUA_Achr1P11560_001	Banana	mitochondrion	70.17	70.46
PGSC0003DMT400031997	Potato	extracellular	69.75	69.75
Solyc08g082430.2.1	Tomato	plastid	69.75	69.75
AT4G23900.1	Thale cress	mitochondrion	69.33	69.62
CDX94238	Canola	plastid	68.49	69.36
CDY25267	Canola	plastid	68.07	68.94
Bra033163.1-P	Field mustard	plastid	68.07	68.94
KRH41307	Soybean	mitochondrion	67.65	68.22
CDX86826	Canola	mitochondrion	67.65	68.22
Bra035260.1-P	Field mustard	mitochondrion	67.65	68.22
AT4G11010.1	Thale cress	mitochondrion, plastid	67.65	67.65
Zm00001d004713_P001	Maize	endoplasmic reticulum	54.2	67.54
CDY47613	Canola	mitochondrion	66.81	67.09
CDY03508	Canola	mitochondrion, plastid	66.81	67.09
Bra013742.1-P	Field mustard	mitochondrion	66.81	67.09
Zm00001d029968_P001	Maize	plastid	38.24	61.07
Zm00001d021526_P001	Maize	cytosol, extracellular	35.29	54.9
Zm00001d024444_P001	Maize	plastid	57.56	47.4
Zm00001d023833_P001	Maize	plastid	37.4	37.55
AT4G23895.3	Thale cress	cytosol	69.33	35.33
Zm00001d050827_P003	Maize	endoplasmic reticulum	22.69	28.88
CDY40857	Canola	endoplasmic reticulum, golgi	38.66	27.46

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	ProteinID:AQK92683.1
EMBL:BT065806	UniProt:C0PBY7	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf
InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349
PANTHER:PTHR11349:SF91	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI000194B404	EnsemblPlantsGene:Zm00001d009774	EnsemblPlants:Zm00001d009774_P001
EnsemblPlants:Zm00001d009774_T001	SEG:seg	:	:	:	:

Description

Nucleoside diphosphate kinase

Coordinates

chr8:-:80508328..80511529

Molecular Weight (calculated)

25974.2 Da

IEP (calculated)

9.457

GRAVY (calculated)

-0.140

Length

238 amino acids

Sequence
(BLAST)

001: MSAASKKLFQ AARSLVLSAS HRSVLAAEGR TAALATLTNF GRKTLPTAYL SYHKQGSHHA ASGWGAIAAA VPAAVYMLQD QEAHAAEMER TFIAIKPDGV
101: QRGLISEIMS RFERKGYKLV AIKLIVPSKE FAEKHYHDLK ERPFFSGLCD FLSSGPVLAM VWEGEGVIKY GRKLIGATDP QKSEPGTIRG DLAIVVGRNI
201: IHGSDGPETA KDEIALWFEP KELVSYTSNA EKWIYGVN

Best Arabidopsis Sequence Match ( AT4G23900.1 )
(BLAST)

001: MSSQICRSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG RKLIGATDPQ KSEPGTIRGD LAVVVGRNII
201: HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN

Arabidopsis Description

NDK4Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LAH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.