Factsheet for Zm00001d029968_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91919	Sorghum	cytosol	98.66	98.66
TraesCS1B01G230300.1	Wheat	cytosol, plastid	87.25	86.67
KRH66485	Soybean	endoplasmic reticulum	86.58	86.58
KRH48835	Soybean	endoplasmic reticulum, nucleus	86.58	86.58
TraesCS1D01G219000.1	Wheat	plastid	87.25	86.09
TraesCS1A01G217200.1	Wheat	golgi	86.58	86.0
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	85.91	85.33
GSMUA_Achr11P...	Banana	cytosol	80.54	84.51
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	83.22	83.78
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	83.22	83.22
Os10t0563700-01	Rice	extracellular	83.89	82.78
GSMUA_Achr8P15010_001	Banana	cytosol	81.88	82.43
Solyc01g089970.2.1	Tomato	extracellular, plastid	81.88	82.43
CDY71669	Canola	cytosol, plasma membrane	81.88	82.43
CDY13081	Canola	cytosol	81.21	81.76
PGSC0003DMT400080042	Potato	cytosol	81.21	81.76
CDY10545	Canola	cytosol	81.21	81.76
Bra027579.1-P	Field mustard	cytosol	81.21	81.76
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	81.21	81.76
CDY42375	Canola	cytosol	80.54	81.08
Bra030844.1-P	Field mustard	cytosol	80.54	81.08
CDY61716	Canola	cytosol	71.81	76.43
Zm00001d021526_P001	Maize	cytosol, extracellular	77.85	75.82
CDX93161	Canola	cytosol	31.54	74.6
Solyc09g055420.1.1	Tomato	cytosol, unclear	57.72	73.5
Bra013108.1-P	Field mustard	cytosol	39.6	70.24
VIT_19s0085g00080.t01	Wine grape	cytosol, mitochondrion	35.57	50.48
Zm00001d023833_P001	Maize	plastid	63.76	40.08
Zm00001d009774_P001	Maize	mitochondrion	61.07	38.24
Zm00001d004713_P001	Maize	endoplasmic reticulum	48.99	38.22
Zm00001d039221_P001	Maize	mitochondrion	59.73	37.55
Zm00001d050827_P003	Maize	endoplasmic reticulum	35.57	28.34
Zm00001d024444_P001	Maize	plastid	48.99	25.26

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	EntrezGene:100217209	Gene3D:3.30.70.141	MapMan:6.3.2.4
UniProt:B4FK49	EMBL:BT037487	EMBL:BT061314	EMBL:EU954075	EMBL:EU954306	EMBL:EU957798
EMBL:EU961140	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_AS	ProteinID:ONL99892.1	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349
PANTHER:PTHR11349:SF66	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI00017B7009	EnsemblPlantsGene:Zm00001d029968	EnsemblPlants:Zm00001d029968_P001
EnsemblPlants:Zm00001d029968_T001	:	:	:	:	:

Description

Nucleoside diphosphate kinase family protein

Coordinates

chr1:-:96900888..96902992

Molecular Weight (calculated)

16541.9 Da

IEP (calculated)

6.809

GRAVY (calculated)

-0.126

Length

149 amino acids

Sequence
(BLAST)

001: MESTFIMIKP DGVQRGLIGE IISRFEKKGF YLKALKLVNV ERSFAEKHYA DLASKPFFQG LVDYIISGPV VAMVWEGKSV VTTGRKIIGA TNPLASEPGT
101: IRGDFAVDIG RNVIHGSDSI ESANKEIALW FPEGPADWQS SQHPWIYEK

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.